PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29883.m001956

Common Name

LOC8276684, RCOM_0990360

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

C2H2

Protein Properties

Length: 466aa MW: 51207.5 Da PI: 9.1951

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29883.m001956	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.3	1.3e-05	78	100	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H 29883.m001956 78 FVCEICNKGFQRDQNLQLHRRGH 100 89*******************88 PP
2	zf-C2H2	12.3	0.00052	154	176	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ 29883.m001956 154 WKCEKCSKIYAVQSDWKAHSKTC 176 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.5E-5	77	100	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.9E-6	77	100	No hit	No description
SMART	SM00355	0.017	78	100	IPR015880	Zinc finger, C2H2-like
Pfam	PF12171	7.3E-5	78	100	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.949	78	100	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	80	100	IPR007087	Zinc finger, C2H2
SMART	SM00355	280	119	149	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	2.2E-4	142	175	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.9E-6	149	174	No hit	No description
SMART	SM00355	170	154	174	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 466 aa Download sequence Send to blast
MFPAAMSNST SLSEDASVSS GNRVVQDFCG LNQIVSTISP QQQQQQKIKK KRSLPGNPDP 60 DAEVVALSPK TLLATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLKQRN SKEIKKRAYV 120 CPEPSCVHHH PSRALGDLTG IKKHYCRKHG EKKWKCEKCS KIYAVQSDWK AHSKTCGTRE 180 YRCDCGTLFS RKDSFITHRA FCDALAEESA RLSAHQLLST NPTAQTLLLQ QNPPSHSLFP 240 LPISHNPWDP PPPPLHHHQN PSNSSSSNNN PSNPVQIKPE THHFHLPPLF HESPPPLPPT 300 DKATGNLIPS SLFQTLSHAA TSASSHHLSA TALLQKAATV GATQTAAGHS QMTRLDIGEL 360 VAVSQAADSA RQQQQQAAYM GGNLATWQKN DRLTRDFLGL TGDHSSGNVA NGSGGVSVSM 420 NVREMLTYTW GVGMQHYNSD RDHSLLKPHG FGFGQPPAAS ETWGDC

Sequence ? help Back to Top

Protein Sequence Length: 466 aa Download sequence Send to blast

MFPAAMSNST SLSEDASVSS GNRVVQDFCG LNQIVSTISP QQQQQQKIKK KRSLPGNPDP  60
DAEVVALSPK TLLATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLKQRN SKEIKKRAYV  120
CPEPSCVHHH PSRALGDLTG IKKHYCRKHG EKKWKCEKCS KIYAVQSDWK AHSKTCGTRE  180
YRCDCGTLFS RKDSFITHRA FCDALAEESA RLSAHQLLST NPTAQTLLLQ QNPPSHSLFP  240
LPISHNPWDP PPPPLHHHQN PSNSSSSNNN PSNPVQIKPE THHFHLPPLF HESPPPLPPT  300
DKATGNLIPS SLFQTLSHAA TSASSHHLSA TALLQKAATV GATQTAAGHS QMTRLDIGEL  360
VAVSQAADSA RQQQQQAAYM GGNLATWQKN DRLTRDFLGL TGDHSSGNVA NGSGGVSVSM  420
NVREMLTYTW GVGMQHYNSD RDHSLLKPHG FGFGQPPAAS ETWGDC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	7e-36	150	214	3	67	Zinc finger protein JACKDAW
5b3h_F	7e-36	150	214	3	67	Zinc finger protein JACKDAW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29883.m001956

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002520944.1	0.0	protein indeterminate-domain 12
Swissprot	O22759	1e-131	IDD12_ARATH; Protein indeterminate-domain 12
TrEMBL	B9S4N7	0.0	B9S4N7_RICCO; Nucleic acid binding protein, putative
STRING	XP_002520944.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF181	34	275

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02670.1	1e-114	indeterminate(ID)-domain 12

Link Out ? help Back to Top
Phytozome	29883.m001956
Entrez Gene	8276684

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]