PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29872.m000548
Common NameLOC8277230, RCOM_0980850
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family Trihelix
Protein Properties Length: 401aa    MW: 46254.9 Da    PI: 4.2547
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29872.m000548genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix50.26.8e-16169252286
       trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                    Wt++e+ +L++a  ++  + +r++l+   W+ev++k+ +e ++er+ +qC+++++ l+k+ykk+k + ++   + +s+++yf++++
  29872.m000548 169 WTEHETFVLLDAWGDKFLQRGRKSLRSEEWQEVAEKVsEESKIERTDTQCRNRLDTLKKKYKKEKINLSE--TGITSKWVYFKKMD 252
                    *************************************788899**********************99998..578889*******7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.5E-22168252No hitNo description
Gene3DG3DSA:1.10.10.607.5E-6168238IPR009057Homeodomain-like
PROSITE profilePS500906.272169226IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MDDTEDDARY PPNPYGVNHQ QGYGSSNRQK LPVRNAPYSR AVGNQYVDDE EDENEEEEDE  60
EELGEEDGEN NQSNGIHYVG KDDDDDDDDD DDDEDDEDAD ADEEEDEEDG QKNYGRRTDN  120
ADLERHPKKR KLKSLVSSYE FAPRVPAPPA VAPSASKPSF AGRNPLTDWT EHETFVLLDA  180
WGDKFLQRGR KSLRSEEWQE VAEKVSEESK IERTDTQCRN RLDTLKKKYK KEKINLSETG  240
ITSKWVYFKK MDLLMSTPAQ QGGLSCGVDS GEYVFMNPRV YLSRANGLDE MRDSPENTES  300
ADEEEDSEGL PPKKRKSRRD RNEGSSFRVL ADSIQKFSEI YEKIENNKRQ QMLELEKMRM  360
DFHRDLEMQK RQIMERTQAE IVKIRQGDDE ENDISADNAS G
Cis-element ? help Back to Top
SourceLink
PlantRegMap29872.m000548
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002528196.10.0trihelix transcription factor ASIL1
RefseqXP_015580286.10.0trihelix transcription factor ASIL1
TrEMBLB9SQC70.0B9SQC7_RICCO; Transcription factor, putative
STRINGXP_002528196.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24413480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.13e-73Trihelix family protein