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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29869.m001189 | ||||||||
Common Name | RCOM_0978650 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | bHLH | ||||||||
Protein Properties | Length: 361aa MW: 40797.6 Da PI: 5.7472 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.6 | 1.7e-11 | 194 | 237 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++ErrRR+ +N+++ Lr l+Pk + l+K++iL A+e++k+Lq 29869.m001189 194 KAERRRRKMLNDRLYDLRALVPKiS------NLNKVSILGDAIEFVKELQ 237 68*********************66......8*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.503 | 187 | 236 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.1E-11 | 193 | 242 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.57E-14 | 194 | 250 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.0E-9 | 194 | 237 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.0E-15 | 195 | 250 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.70E-10 | 195 | 239 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MKQEAMISST NIDTGFVVNM KMIGEEQSKA YLADHDNMEE KDHTNKNQFH QAPNKNLNLP 60 YDISADRIRL CSPPMNFLQQ FHYSNDRDNK TKSNDHIFFE EAATNSSNGL QDQMDAAALH 120 KIMMMTTNTE NMHMKFMGPS SGKKEQQANN DNDSIKHENG ISDSVSDCSN QMDDENDAKY 180 RRRTGRGPPA KDLKAERRRR KMLNDRLYDL RALVPKISNL NKVSILGDAI EFVKELQKQA 240 KELENELEEH SDDDQGVKNG IHNNIPQETL NQDGVDVAQI DGNEFFVKVF CEHKAGRFMK 300 LMEALDCLGL EVTNANVTSF RGLVSNVFKV ECHGLSSSPP SPPPHAQWPC QFQSPPSPPP 360 S |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 180 | 200 | RRRTGRGPPAKDLKAERRRRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29869.m001189 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015576056.1 | 0.0 | transcription factor ABORTED MICROSPORES | ||||
TrEMBL | B9S5L8 | 0.0 | B9S5L8_RICCO; Uncharacterized protein | ||||
STRING | XP_002521287.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4225 | 32 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16910.1 | 1e-64 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | 29869.m001189 |