PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29851.m002486 | ||||||||
Common Name | RCOM_0939050 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | B3 | ||||||||
Protein Properties | Length: 189aa MW: 21411.3 Da PI: 8.297 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 30.6 | 5.8e-10 | 103 | 174 | 15 | 87 |
-EE--HHH.HTT---..--SEEEEEETTS..-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 15 rlvlpkkfaeehggkkeesktltledesg..rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 ++p +fa+ ++ sk++++++++g r+ v+ + ++g+++ +GW eF ++n L e D+++F+l++ 29851.m002486 103 EKIVPASFARIYMRG--ASKDIRVKSSKGdgRERAVQSDW-IRRGGCLRLNGWAEFYNDNYLVEADVCLFELIHM 174 4589*****888644..56789999988855777777755.4455555556********************9874 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02362 | 6.6E-8 | 102 | 175 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 5.69E-9 | 104 | 180 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.3E-8 | 105 | 175 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MGDDASSEIL DSNPNPSASK CTSRKMDYTL PPKNLPTPIY AAFGDKQEYQ RTGKSCKMEE 60 EDDMVQNGNF NDAKSKAKFE IFTSIKFHST LSRMPQESKN AVEKIVPASF ARIYMRGASK 120 DIRVKSSKGD GRERAVQSDW IRRGGCLRLN GWAEFYNDNY LVEADVCLFE LIHMRNIVLK 180 ASVFPAYLE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29851.m002486 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015574564.1 | 1e-115 | B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | B9RZG4 | 1e-140 | B9RZG4_RICCO; Uncharacterized protein | ||||
STRING | XP_002519133.1 | 1e-141 | (Ricinus communis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 8e-09 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | 29851.m002486 |