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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29851.m002407 | ||||||||
Common Name | LOC8279496, RCOM_0936210 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | HSF | ||||||||
Protein Properties | Length: 218aa MW: 24931.4 Da PI: 10.3549 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 99.8 | 2.6e-31 | 29 | 141 | 2 | 102 |
HHHHHHHHHCTG.....................GGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXT CS HSF_DNA-bind 2 Flkklyeilede.....................elkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskske 76 Fl+k+y++le++ + k++++w+++gn f+v+ + +f++ Lp+yFkh+nf+SF+RQLn+YgFkk++++ 29851.m002407 29 FLSKTYDLLEENgegssssppplllganntgvvDGKKIVTWNAEGNGFIVWSPADFSELTLPRYFKHNNFSSFIRQLNTYGFKKTSSKL------- 117 999*******8888888899999999999999999*************************************************99876....... PP TSEEEEESXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 77 kiweFkhksFkkgkkellekikrkks 102 weFkh++F+kg++++l +i rkk 29851.m002407 118 --WEFKHEKFQKGSRHMLVEITRKKC 141 ..*********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.7E-33 | 19 | 134 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 5.7E-36 | 25 | 139 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.7E-27 | 29 | 139 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 1.22E-23 | 64 | 139 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MSKNLSIISR RSPSTSSQQS PKLKAPAPFL SKTYDLLEEN GEGSSSSPPP LLLGANNTGV 60 VDGKKIVTWN AEGNGFIVWS PADFSELTLP RYFKHNNFSS FIRQLNTYGF KKTSSKLWEF 120 KHEKFQKGSR HMLVEITRKK CEPSVFPAYL RASNEHNNAP NAVEDNNRLL LLKENNNLRR 180 DNLQLQMQIA QFRDLQTKLL DCLTQYMGSQ QHKIRRLC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 8e-14 | 62 | 139 | 32 | 120 | Heat shock factor protein 1 |
5d5u_B | 8e-14 | 62 | 139 | 41 | 129 | Heat shock factor protein 1 |
5d5v_B | 8e-14 | 62 | 139 | 41 | 129 | Heat shock factor protein 1 |
5d5v_D | 8e-14 | 62 | 139 | 41 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29851.m002407 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002519055.1 | 1e-162 | heat stress transcription factor B-2a | ||||
TrEMBL | B9RZ86 | 1e-161 | B9RZ86_RICCO; DNA binding protein, putative | ||||
STRING | XP_002519055.1 | 1e-162 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11357 | 28 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32330.1 | 2e-29 | heat shock transcription factor A1D |
Link Out ? help Back to Top | |
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Phytozome | 29851.m002407 |
Entrez Gene | 8279496 |