PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29848.m004660

Common Name

RCOM_0924640

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

CPP

Protein Properties

Length: 873aa MW: 95499.1 Da PI: 6.1932

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29848.m004660	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	48.7	1.5e-15	452	490	3	41
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +k+CnCkk+kClk+YC+Cfaag +C++ C C+dC+N+ e 29848.m004660 452 CKRCNCKKTKCLKLYCDCFAAGIYCADPCACQDCFNRPE 490 79**********************************876 PP
2	TCR	50.9	3e-16	537	575	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks ClkkYCeC++a++ Cs+eC+Ce+CkN 29848.m004660 537 RHKRGCNCKKSMCLKKYCECYQANVGCSSECRCEGCKNG 575 589***********************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	3.4E-16	450	491	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	35.504	451	577	IPR005172	CRC domain
Pfam	PF03638	2.2E-11	453	488	IPR005172	CRC domain
SMART	SM01114	7.4E-17	537	578	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	1.5E-11	539	574	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 873 aa Download sequence Send to blast
MGSHTPAKTS TSPSTSISAA STVVLSDSSS VQESPFLNYI NNLSPIKPVK VAHGAQGFGA 60 LSSPPLIFTS PRTLPERGTS FLQRSQLCQI SSAEMPENDD RRKKLVDHSN DFEDSVAHHS 120 RLITDTQKET FVKNSTLDQP GSSSGCIDEY LNDPVDVDGA NCVNLTNSKA FCEQGDKSSQ 180 VQPSIEINLR QAEEEKCGSK QPFNECQNIE SDLPVDHALE NKQCDGLGTH IIQANEDTDE 240 NAAATTHRAN QNIGQRDPEA GQLQRGMSRR CLQFEEARQK ITLNRIHSTD PTNNVNGSGS 300 PASTTELENL DSSYIEIAAY SHKKMINLSE PTTSMFPRFS GKSLVVVSKP SGIGLHLNSI 360 VTAMPMGHSG AESNKSTPIM SCHQDAGDRL LEAQDSEAAG AASSESFHTA ESLNILQPLV 420 HHVTPLKRRN FKLEHADNFE EKKSLSIDGD GCKRCNCKKT KCLKLYCDCF AAGIYCADPC 480 ACQDCFNRPE YEDTVLETRQ QIESRNPLAF APKIVQHAKE FAASREDRSS SMPSLSRHKR 540 GCNCKKSMCL KKYCECYQAN VGCSSECRCE GCKNGYGRKE EYGIIEETVS DRVGEERLEG 600 RVDDKLAIVA TDEDLLPAEL YDLHNLTPST PSFQHSDHGK STPKSPLSSS RHVPSPESDI 660 SILPSNAKST RSSRYCDTIP EASKETVDID SCDQGIDYNV SEMMSQFSSK CSALADIYDP 720 NPLTNPMTVT LGSSASSKTR DWSSGSRFQL CPGSGRLPSG RSVRWWNSPI TPMTRLGENK 780 IQGHDSDSGL YNILEDDTPE ILKEGSTPSA SVKASSPNKK RVSPPQNHIH DFRSSSSGGL 840 KSGRKFILRS VPSFPPLTPC VNSEGIREEK QQL

Sequence ? help Back to Top

Protein Sequence Length: 873 aa Download sequence Send to blast

MGSHTPAKTS TSPSTSISAA STVVLSDSSS VQESPFLNYI NNLSPIKPVK VAHGAQGFGA  60
LSSPPLIFTS PRTLPERGTS FLQRSQLCQI SSAEMPENDD RRKKLVDHSN DFEDSVAHHS  120
RLITDTQKET FVKNSTLDQP GSSSGCIDEY LNDPVDVDGA NCVNLTNSKA FCEQGDKSSQ  180
VQPSIEINLR QAEEEKCGSK QPFNECQNIE SDLPVDHALE NKQCDGLGTH IIQANEDTDE  240
NAAATTHRAN QNIGQRDPEA GQLQRGMSRR CLQFEEARQK ITLNRIHSTD PTNNVNGSGS  300
PASTTELENL DSSYIEIAAY SHKKMINLSE PTTSMFPRFS GKSLVVVSKP SGIGLHLNSI  360
VTAMPMGHSG AESNKSTPIM SCHQDAGDRL LEAQDSEAAG AASSESFHTA ESLNILQPLV  420
HHVTPLKRRN FKLEHADNFE EKKSLSIDGD GCKRCNCKKT KCLKLYCDCF AAGIYCADPC  480
ACQDCFNRPE YEDTVLETRQ QIESRNPLAF APKIVQHAKE FAASREDRSS SMPSLSRHKR  540
GCNCKKSMCL KKYCECYQAN VGCSSECRCE GCKNGYGRKE EYGIIEETVS DRVGEERLEG  600
RVDDKLAIVA TDEDLLPAEL YDLHNLTPST PSFQHSDHGK STPKSPLSSS RHVPSPESDI  660
SILPSNAKST RSSRYCDTIP EASKETVDID SCDQGIDYNV SEMMSQFSSK CSALADIYDP  720
NPLTNPMTVT LGSSASSKTR DWSSGSRFQL CPGSGRLPSG RSVRWWNSPI TPMTRLGENK  780
IQGHDSDSGL YNILEDDTPE ILKEGSTPSA SVKASSPNKK RVSPPQNHIH DFRSSSSGGL  840
KSGRKFILRS VPSFPPLTPC VNSEGIREEK QQL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	1e-18	453	574	12	120	Protein lin-54 homolog
5fd3_B	1e-18	453	574	12	120	Protein lin-54 homolog
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29848.m004660

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ010165	5e-38	AJ010165.1 Glycine max mRNA for cysteine-rich polycomb-like protein (gpp1 gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015572572.1	0.0	CRC domain-containing protein TSO1 isoform X1
Refseq	XP_025012504.1	0.0	CRC domain-containing protein TSO1 isoform X1
TrEMBL	B9RP78	0.0	B9RP78_RICCO; Tso1, putative
STRING	XP_002515547.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8565	28	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	4e-60	TESMIN/TSO1-like CXC 2

Link Out ? help Back to Top
Phytozome	29848.m004660