PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29848.m004577
Common NameRCOM_0922700
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family TALE
Protein Properties Length: 456aa    MW: 50938.5 Da    PI: 6.1399
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29848.m004577genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.31.1e-073754082154
                    HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
       Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                    k +yp++e++++L +++gL+ +q+ +WF N+R +
  29848.m004577 375 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 408
                    469*****************************87 PP
2ELK27.56.9e-10329350122
            ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                    ELKh+L+++Y++++ ++++E++
  29848.m004577 329 ELKHELKQGYKEKIADIREEIL 350
                    9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012555.1E-20164208IPR005540KNOX1
PfamPF037901.3E-17166207IPR005540KNOX1
SMARTSM012565.4E-28217272IPR005541KNOX2
PfamPF037915.6E-20222271IPR005541KNOX2
PfamPF037892.1E-5329350IPR005539ELK domain
PROSITE profilePS5121310.109329349IPR005539ELK domain
SMARTSM011880.0012329350IPR005539ELK domain
PROSITE profilePS5007111.726349412IPR001356Homeobox domain
SuperFamilySSF466894.71E-16351415IPR009057Homeodomain-like
SMARTSM003892.4E-11351416IPR001356Homeobox domain
CDDcd000862.73E-11352413No hitNo description
Gene3DG3DSA:1.10.10.604.0E-25356413IPR009057Homeodomain-like
PfamPF059201.3E-17369408IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MAFHHNLSQE LPLHHFADQT QQQQQQHQNI QETTSASPPN WLNTALLRTQ QPQQQQPPPP  60
HHSHFTDTNN FLNLHTTSTT NSDSTASQNP TQWLSRSSSI LNRNHSDVMD DVTAVAATAA  120
DSIIAGTISQ ESTDLKTNIN NKSEGGVVES GSGGGEGVVN WQNARYKAEI LSHPLYDQLL  180
SAHVACLRIA TPVDQLPRID AQLAQSQHVV AKYSALGQGL VADDKELDQF MTHYFLLLCS  240
FKEQLQQHVR VHAMEAVMAC WEIEQSLQSL TGVSPGEGTG ATMSDDDDDQ VDSDANLFDP  300
SLDGADTMGF GPLIPTESER SLMERVRHEL KHELKQGYKE KIADIREEIL RKRRAGKLPG  360
DTTSVLKAWW QSHSKWPYPT EEDKARLVQE TGLQLKQINN WFINQRKRNW HSNPSSSTVL  420
KSKRKRNCSN STELCGGQLN LSEGEPHILL LDKSLT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A2e-12352416872Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1405425RKRNWHSNPSSSTVLKSKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMap29848.m004577
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015572602.10.0homeobox protein knotted-1-like 3 isoform X2
SwissprotP480000.0KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLB9RNZ60.0B9RNZ6_RICCO; Homeobox protein knotted-1, putative
STRINGXP_002515465.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.10.0KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]