![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 29844.m003241 | ||||||||
Common Name | RCOM_0911450 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
|
||||||||
Family | CPP | ||||||||
Protein Properties | Length: 727aa MW: 79552.6 Da PI: 5.6033 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 50.1 | 5.5e-16 | 433 | 471 | 2 | 40 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 +k+CnCkkskClk+YCeCfaag++C e C+C++C+Nk 29844.m003241 433 ACKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQECFNKP 471 589**********************************96 PP | |||||||
2 | TCR | 51 | 2.9e-16 | 518 | 556 | 1 | 39 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN 29844.m003241 518 RHKRGCNCKKSNCLKKYCECYQGGVGCSINCRCEGCKNA 556 589***********************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 2.6E-17 | 432 | 473 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 37.252 | 433 | 558 | IPR005172 | CRC domain |
Pfam | PF03638 | 1.4E-11 | 435 | 470 | IPR005172 | CRC domain |
SMART | SM01114 | 3.7E-17 | 518 | 559 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.2E-11 | 520 | 556 | IPR005172 | CRC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009934 | Biological Process | regulation of meristem structural organization | ||||
GO:0048444 | Biological Process | floral organ morphogenesis | ||||
GO:0051302 | Biological Process | regulation of cell division | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 727 aa Download sequence Send to blast |
MDTPEKKTQI TTPLSKFEDS PVFNYINSLS PIKPVKSIHI TQTFQSLSFS SLPSIFTSPH 60 VSSHKESRFL RRHNNSDPRK PELPSQNGNK VGSNEGATLD VAQLYDDNSS ELQETFDPVV 120 SIGEVSVEPS SEQVKFAIEL PRRLKYDCGS PENDATPCCG PQVDCVSKLT GMSALEVSQK 180 CLPEHEAHLQ GMYHTEQKKE SMECDWEMIS DAADLLIFSS PIDTESFKVL MQKSMGPSKQ 240 HDLENPSTQP GETIEPKEMN QTWDNVDANN VPNKEAVSNL HRGMRRRCLD FEMVGARRKN 300 LVDGSTSSTS IGGQPDEKIA STDKQLVPVK PGGDSSKCVL PGIGLHLNAL AITSKGSKSV 360 KLENLSCGIS LASSVASFHS LPTCEELNES LLPLAPERDT DPTEDGVPLV EDVSQASACL 420 VTEERKLEGE GEACKRCNCK KSKCLKLYCE CFAAGVYCIE PCSCQECFNK PIHEDTVLAT 480 RKQIESRNPL AFAPKVIRSS EPVTEIGDEF SKTPASARHK RGCNCKKSNC LKKYCECYQG 540 GVGCSINCRC EGCKNAFGRK DGSAPSETEA EPEEETEGDE NNGADKVAQN IEIENNEEQI 600 PNSALPMTPL PLCRPLLQLP FSSKSKPPRS FLGIGSSSGL YTSQKYGKPN ILRPEQKFEK 660 QLQTVPDDDM PEVLRGNYTP STGIKTSPNS KRVSPPQSIL GSSPGLRSGR KLILQSIPSF 720 PSLTPQH |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 3e-17 | 437 | 555 | 14 | 120 | Protein lin-54 homolog |
5fd3_B | 3e-17 | 437 | 555 | 14 | 120 | Protein lin-54 homolog |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00624 | PBM | Transfer from PK22848.1 | Download |
![]() |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 29844.m003241 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015573539.1 | 0.0 | protein tesmin/TSO1-like CXC 3 | ||||
TrEMBL | B9RTM0 | 0.0 | B9RTM0_RICCO; Tso1, putative | ||||
STRING | XP_002517089.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2619 | 33 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G22780.1 | 1e-159 | Tesmin/TSO1-like CXC domain-containing protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | 29844.m003241 |