PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29844.m003167 | ||||||||
Common Name | LOC8280172, RCOM_0909000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | bHLH | ||||||||
Protein Properties | Length: 234aa MW: 27269.2 Da PI: 8.4327 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.7 | 0.00011 | 80 | 124 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ Er RR+ ++++ L ++lP+ +K +K +i ++A + I++L 29844.m003167 80 RKMSERLRRETEKTGYLALYSVLPPG-----TKKDKNSIMQMASKRIQEL 124 4899********************97.....7999999*********998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 6.67E-10 | 72 | 143 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 10.899 | 75 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.33E-4 | 79 | 125 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 4.6E-5 | 79 | 146 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.0E-5 | 81 | 130 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MDHFFGEECL QIDAFWDVLG PVLDQSAFQP YTSIPRSEIA ANRSNSTNMN KRMIEFMKRS 60 FPVVTTETQK SDDSTRCYRR KMSERLRRET EKTGYLALYS VLPPGTKKDK NSIMQMASKR 120 IQELKGSKEV LERRNYELEV KLEEMRIRNE STSAKIQFKV HYPGTSGMTY MVEVLKCLNS 180 LGSKIRSIES SFSDQGIAAV MDIETQISEA EVRKEVQRTL EDLQWKLQFH FLEY |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29844.m003167 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002517016.1 | 1e-176 | transcription factor bHLH92 | ||||
TrEMBL | B9RTE7 | 1e-174 | B9RTE7_RICCO; DNA binding protein, putative | ||||
STRING | XP_002517016.1 | 1e-175 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12572 | 27 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43650.1 | 2e-34 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | 29844.m003167 |
Entrez Gene | 8280172 |