PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29842.m003644 | ||||||||
Common Name | LOC8267373, RCOM_0905720 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | MYB_related | ||||||||
Protein Properties | Length: 74aa MW: 8698.36 Da PI: 4.0691 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33.8 | 7.7e-11 | 27 | 68 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++++E+ l ++ ++ G + W++Ia +++ gRt++++ +w++ 29842.m003644 27 EFSEDEEALVIRMYNLVGER-WSLIAGRIP-GRTAEDIEKYWNS 68 59******************.*********.***********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.448 | 20 | 74 | IPR017930 | Myb domain |
SMART | SM00717 | 8.5E-9 | 24 | 72 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.7E-10 | 27 | 68 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.91E-8 | 27 | 67 | No hit | No description |
SuperFamily | SSF46689 | 4.13E-9 | 28 | 70 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.2E-14 | 28 | 69 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 74 aa Download sequence Send to blast |
MADSEHSTSD ETYMDSQEER NQESKIEFSE DEEALVIRMY NLVGERWSLI AGRIPGRTAE 60 DIEKYWNSRY STSE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | MYB-type transcription factor involved in epidermal cell fate specification. Acts as a negative regulator of trichome development, by mediating lateral inhibition. Promotes the formation of hair developing cells in H position in root epidermis, probably by inhibiting non-hair cell formation. {ECO:0000269|PubMed:15063185, ECO:0000269|PubMed:15584952}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29842.m003644 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002518531.1 | 1e-47 | MYB-like transcription factor ETC1 | ||||
Swissprot | Q9LNI5 | 7e-16 | ETC1_ARATH; MYB-like transcription factor ETC1 | ||||
TrEMBL | B9RXR2 | 3e-46 | B9RXR2_RICCO; Triptychon and cpc, putative | ||||
STRING | XP_002518531.1 | 5e-47 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2692 | 31 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01380.1 | 3e-18 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | 29842.m003644 |
Entrez Gene | 8267373 |