PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

TALE

Protein Properties

Length: 353aa MW: 39819.9 Da PI: 6.4016

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29842.m003531	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.7	2.2e-09	281	315	21	55
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yps++++ LA+++gL+++q+ +WF N+R ++ 29842.m003531 281 KWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 315 569*****************************885 PP
2	ELK	37.8	4e-13	235	256	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK qLlr YsgyLgsLkqEF+ 29842.m003531 235 ELKGQLLRRYSGYLGSLKQEFM 256 9********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01255	3.8E-20	99	143	IPR005540	KNOX1
Pfam	PF03790	3.5E-22	101	139	IPR005540	KNOX1
SMART	SM01256	3.3E-26	148	199	IPR005541	KNOX2
Pfam	PF03791	5.3E-21	151	198	IPR005541	KNOX2
SMART	SM01188	8.6E-8	235	256	IPR005539	ELK domain
Pfam	PF03789	1.7E-10	235	256	IPR005539	ELK domain
PROSITE profile	PS51213	10.912	235	255	IPR005539	ELK domain
PROSITE profile	PS50071	12.989	255	318	IPR001356	Homeobox domain
SMART	SM00389	7.4E-13	257	322	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.84E-19	257	332	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.5E-28	260	320	IPR009057	Homeodomain-like
CDD	cd00086	1.74E-12	267	319	No hit	No description
Pfam	PF05920	6.3E-17	275	314	IPR008422	Homeobox KN domain
PROSITE pattern	PS00027	0	293	316	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009934	Biological Process	regulation of meristem structural organization
GO:0048440	Biological Process	carpel development
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MEGGSNSTSC MMAFGDNSNG LCPMMMMMPL MTSSHQHHHH HHHPNADLSS NTLFLPLPPT 60 NNQDQNRNSS SGSSMILDDH NPNTNTGCYF MDNNDAAAAS VKAKIMAHPH YHRLLAAYIN 120 CQKVGAPPEV VTRLEEACAS AATMGQAGTS CIGEDPALDQ FMEAYCEMLT KYEQELSKPF 180 KEAMLFLQRV ECQFKALTVA SPNSALGEAS DRNGSSEEEV DVNNNFIDPQ AEDQELKGQL 240 LRRYSGYLGS LKQEFMKKRK KGKLPKEARQ QLLDWWSRHY KWPYPSESQK LALAESTGLD 300 QKQINNWFIN QRKRHWKPSE DMQFVVMDAT HPHYYMDNVL GNPFPMDISP ALL

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MEGGSNSTSC MMAFGDNSNG LCPMMMMMPL MTSSHQHHHH HHHPNADLSS NTLFLPLPPT  60
NNQDQNRNSS SGSSMILDDH NPNTNTGCYF MDNNDAAAAS VKAKIMAHPH YHRLLAAYIN  120
CQKVGAPPEV VTRLEEACAS AATMGQAGTS CIGEDPALDQ FMEAYCEMLT KYEQELSKPF  180
KEAMLFLQRV ECQFKALTVA SPNSALGEAS DRNGSSEEEV DVNNNFIDPQ AEDQELKGQL  240
LRRYSGYLGS LKQEFMKKRK KGKLPKEARQ QLLDWWSRHY KWPYPSESQK LALAESTGLD  300
QKQINNWFIN QRKRHWKPSE DMQFVVMDAT HPHYYMDNVL GNPFPMDISP ALL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	250	259	LKQEFMKKRK
2	256	260	KKRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Possible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29842.m003531

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002518420.1	0.0	homeobox protein SBH1
Swissprot	P46608	1e-161	HSBH1_SOYBN; Homeobox protein SBH1
TrEMBL	B9RXF1	0.0	B9RXF1_RICCO; Homeobox protein knotted-1, putative
STRING	XP_002518420.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2039	34	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62360.1	1e-145	KNOX/ELK homeobox transcription factor

Link Out ? help Back to Top
Phytozome	29842.m003531
Entrez Gene	8277968

Publications ? help Back to Top
Shu Y, et al. GmSBH1, a homeobox transcription factor gene, relates to growth and development and involves in response to high temperature and humidity stress in soybean. Plant Cell Rep., 2015. 34(11): p. 1927-37 [PMID:26205508]