PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29841.m002799
Common NameRCOM_0897930
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family CPP
Protein Properties Length: 348aa    MW: 38599.6 Da    PI: 8.7373
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29841.m002799genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR50.93.2e-161957341
            TCR  3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41
                   +k+CnCk+skClk+YCeCfaag++C ++C CedC+N+ e
  29841.m002799 19 CKRCNCKRSKCLKLYCECFAAGVYCLDSCACEDCFNRPE 57
                   89**********************************876 PP
2TCR52.97e-17103142140
            TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                    ++k+gCnCkkskClkkYCeC++ag+ Cs+ C+Ce+CkN+ 
  29841.m002799 103 RHKRGCNCKKSKCLKKYCECYQAGVGCSSGCRCEGCKNSY 142
                    589***********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.1E-161758IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.78118143IPR005172CRC domain
PfamPF036382.6E-122055IPR005172CRC domain
SMARTSM011144.1E-17103144IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.4E-12105141IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MVYYVFRKRA KPINDSEGCK RCNCKRSKCL KLYCECFAAG VYCLDSCACE DCFNRPEYED  60
TVLDTRQQIE ARNPLAFAPK VVKQATNSPA NEEGNWTTPS SARHKRGCNC KKSKCLKKYC  120
ECYQAGVGCS SGCRCEGCKN SYGKKAVSVY RRAEKSEKSS HEMLDASEAQ DEFIRTGRAH  180
QFTSVWDEFA DITPVSRRHS GLIATSGSLN IGNSSKASQA QAHQRSSMLS SDGYLHSHHS  240
PTSLAPKLLY GSEAMPELSP DSLLYNMLKE DDTPEMPIKT CTPTKMVKAG SPNQKRVSPP  300
QIRSQDLRSS SSKGLRSGRK FNLPDMPSFP PLTPYSKSKD GVQQIDGD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A7e-192014012120Protein lin-54 homolog
5fd3_B7e-192014012120Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap29841.m002799
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015573809.10.0CRC domain-containing protein TSO1 isoform X1
RefseqXP_015573811.10.0CRC domain-containing protein TSO1 isoform X3
TrEMBLB9RV080.0B9RV08_RICCO; Tso1, putative
STRINGXP_002517577.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF142771417
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-66TESMIN/TSO1-like CXC 2