PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29830.m001437
Common NameLOC8268763, RCOM_0873830
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C2H2
Protein Properties Length: 256aa    MW: 28275.5 Da    PI: 6.7986
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29830.m001437genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.0001114135223
                    EETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                    +C  C + F++ + L  H+r+H
  29830.m001437 114 TCAVCERKFPTIYALFGHLRMH 135
                    7********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280115135IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MENPSDPKLE SSSPQQQPQG KNNPQNDANE NISGRSLPPN AMPISRLEVT TPTQFTIDTA  60
PRPSAHIRVR AGTKNGGGVN AGADKGFRKK RGRSLSYDGD VRPKRRADTG LPSTCAVCER  120
KFPTIYALFG HLRMHNKRDW RGAFPPPVYN PDWVENGGSN VDQSLQQPAA TQQVEEKEVI  180
PELLDVAQEI LKKMQQENIS NVTDPIKKLE FDLNLLPQEN SSGPSSNMAS SQEKIATRFD  240
LNFPPPKEDN DDPPAI
Cis-element ? help Back to Top
SourceLink
PlantRegMap29830.m001437
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002521708.10.0uncharacterized protein LOC8268763
TrEMBLB9S6T90.0B9S6T9_RICCO; Uncharacterized protein
STRINGXP_002521708.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2696933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35700.13e-10C2H2 family protein