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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29830.m001436 | ||||||||
Common Name | LOC8268762, RCOM_0873820 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | C2H2 | ||||||||
Protein Properties | Length: 277aa MW: 28628.9 Da PI: 9.5758 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.6 | 0.00084 | 148 | 168 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ Cgk+F ++ H+r H 29830.m001436 148 CSLCGKRFGSWKGVFGHLRAH 168 ******************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE pattern | PS00028 | 0 | 148 | 168 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048235 | Biological Process | pollen sperm cell differentiation | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
MASSSRENSP TKSNSPKGNA NEDAVPVPPV SATFPVPAVP VATFPAPGPA RALQFGEGSS 60 SAPPLQQLVE GISSPSSSSS SSPGNTPPRR IVEIVLGSSH GGGKSGEGSP KKKKALPSSG 120 KKDGESNPGV EKKRKKAEMD APKSDPICSL CGKRFGSWKG VFGHLRAHPE RDWRGAFPPP 180 KGEAASWSPI KTGGPDDNQA MQVELLAPTL LGLARETLSK MRQESTRVGN IDLNKEPESS 240 SSPSPPPPPQ GGASAGLDLN KSPPPESDQD GINGKEE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 131 | 135 | KKRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29830.m001436 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002521707.1 | 0.0 | sal-like protein 3 | ||||
TrEMBL | B9S6T8 | 0.0 | B9S6T8_RICCO; Uncharacterized protein | ||||
STRING | XP_002521707.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10202 | 21 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35700.1 | 5e-14 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | 29830.m001436 |
Entrez Gene | 8268762 |