PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29830.m001436
Common NameLOC8268762, RCOM_0873820
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C2H2
Protein Properties Length: 277aa    MW: 28628.9 Da    PI: 9.5758
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29830.m001436genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.00084148168323
                    ETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                    C+ Cgk+F ++     H+r H
  29830.m001436 148 CSLCGKRFGSWKGVFGHLRAH 168
                    ******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280148168IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MASSSRENSP TKSNSPKGNA NEDAVPVPPV SATFPVPAVP VATFPAPGPA RALQFGEGSS  60
SAPPLQQLVE GISSPSSSSS SSPGNTPPRR IVEIVLGSSH GGGKSGEGSP KKKKALPSSG  120
KKDGESNPGV EKKRKKAEMD APKSDPICSL CGKRFGSWKG VFGHLRAHPE RDWRGAFPPP  180
KGEAASWSPI KTGGPDDNQA MQVELLAPTL LGLARETLSK MRQESTRVGN IDLNKEPESS  240
SSPSPPPPPQ GGASAGLDLN KSPPPESDQD GINGKEE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131135KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMap29830.m001436
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002521707.10.0sal-like protein 3
TrEMBLB9S6T80.0B9S6T8_RICCO; Uncharacterized protein
STRINGXP_002521707.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102022128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35700.15e-14C2H2 family protein