PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29830.m001386
Common NameLOC8268712, RCOM_0870520
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 317aa    MW: 34812.6 Da    PI: 5.7068
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29830.m001386genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.28e-104391254
                   HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                   ++ +  rE+ RRdr+N+ f eL   l ++     +K++Ka+iL+ +++ +k+L
  29830.m001386 43 KVQKADREKLRRDRLNEQFLELGNTLDPD----RPKNDKATILTDTIQMLKDL 91
                   677889********************997....79****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.9324191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-1342111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.47E-74296No hitNo description
Gene3DG3DSA:4.10.280.107.5E-1242114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-74391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-64797IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MDQWNITNDF SQPVATATDM APSSSESRNR LEAEAKDPIA AKKVQKADRE KLRRDRLNEQ  60
FLELGNTLDP DRPKNDKATI LTDTIQMLKD LTAEVSRLKA EYATLSEESR ELMQEKNELR  120
EEKASLKSDI ENLSVQYQQR VRVMFPWASV DPSVVVGPTY SYPVPLPVPP GPIPMHPSLH  180
PFPFFGNQNP GAIPGPCSTF IPYPAPANPP TEHASLPYAS TSNTLSKHDS KSKSADHPRS  240
SSAERCDDSN DVATELQLTM PGSSAQQDTS TGERKGKPLQ RKERNITPGS TSSGYSTSHG  300
VQDNSSNSVG DVPKPNN
Cis-element ? help Back to Top
SourceLink
PlantRegMap29830.m001386
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002521657.10.0transcription factor bHLH121 isoform X2
SwissprotQ9LT231e-79BH121_ARATH; Transcription factor bHLH121
TrEMBLB9S6N80.0B9S6N8_RICCO; DNA binding protein, putative
STRINGXP_002521657.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22823376
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.15e-72bHLH family protein
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]