PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29827.m002538 | ||||||||
Common Name | LOC8284606, PALM1, RCOM_0864880 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | C2H2 | ||||||||
Protein Properties | Length: 232aa MW: 25578.1 Da PI: 6.5022 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.4 | 0.00011 | 72 | 94 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H 29827.m002538 72 YTCTFCRREFRSAQALGGHMNVH 94 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.55E-6 | 69 | 99 | No hit | No description |
Pfam | PF13912 | 1.7E-5 | 72 | 95 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0066 | 72 | 94 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.157 | 72 | 99 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 74 | 94 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MAAELGLLSL AQLELQKLAE SQQNQHQHQL NSSSSWMWNP KQTHEDEDSW EVRAFEEDTG 60 NIMGTTWPPR SYTCTFCRRE FRSAQALGGH MNVHRRDRAR LHQTPPGSIN PNSSSTNSTS 120 ASTFIIPARE FSTNGGLCLL YQLPNPNGIF TTTAMNACAI DHSPSTLLSI SPYPHNYPVA 180 SPVVNSSHFY SSKAQPVAST DNSSNNCKDL GNEELDLELR LGHRSTSSSS PS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 2e-13 | 67 | 94 | 2 | 29 | superman protein |
2l1o_A | 2e-13 | 67 | 94 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29827.m002538 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM453339 | 0.0 | HM453339.1 Ricinus communis palmate-like pentafoliata 1 transcription factor (PALM1) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002519824.1 | 1e-173 | transcriptional regulator SUPERMAN | ||||
TrEMBL | B9S1F9 | 1e-172 | B9S1F9_RICCO; Palmate-like pentafoliata 1 transcription factor | ||||
STRING | XP_002519824.1 | 1e-172 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3525 | 31 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17810.1 | 2e-40 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | 29827.m002538 |
Entrez Gene | 8284606 |