PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 29822.m003350 | ||||||||
Common Name | LOC8269319, RCOM_0850840 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 212aa MW: 24384.5 Da PI: 5.5203 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.4 | 1.6e-20 | 69 | 122 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t+eq++ Le+ Fe+++++ e++++LAkklg++ rqV vWFqNrRa++k 29822.m003350 69 KKRRLTSEQVNLLEKSFEEENKLEPERKTQLAKKLGMQPRQVAVWFQNRRARWK 122 56789************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 132.7 | 1.3e-42 | 68 | 159 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl++eqv+lLE+sFeee+kLeperK++la++Lg+qprqvavWFqnrRAR+ktkqlE+dy++Lk++yd+l ++ ++ ke+++L++e+ 29822.m003350 68 EKKRRLTSEQVNLLEKSFEEENKLEPERKTQLAKKLGMQPRQVAVWFQNRRARWKTKQLERDYDVLKASYDSLLSDFDNTVKENQKLKSEVV 159 69**************************************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.56E-20 | 56 | 126 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.961 | 64 | 124 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.5E-19 | 67 | 128 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.22E-17 | 69 | 125 | No hit | No description |
Pfam | PF00046 | 9.1E-18 | 69 | 122 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.9E-22 | 70 | 131 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 5.7E-6 | 95 | 104 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 99 | 122 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 5.7E-6 | 104 | 120 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.3E-19 | 124 | 166 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0001558 | Biological Process | regulation of cell growth | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 212 aa Download sequence Send to blast |
MDQSGRLLFN PSASSCHGGN MLFLGNCDSV FRGPRSMFKM EDTSKKRPFF SSPEDFFDDE 60 YYDEQLPEKK RRLTSEQVNL LEKSFEEENK LEPERKTQLA KKLGMQPRQV AVWFQNRRAR 120 WKTKQLERDY DVLKASYDSL LSDFDNTVKE NQKLKSEVVS LTEKLQTKEL TGATIPGQEP 180 ESLPAVTANA SAFELNVKLR TGSALEALEV QW |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 116 | 124 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00323 | DAP | Transfer from AT3G01470 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 29822.m003350 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015573608.1 | 1e-156 | homeobox-leucine zipper protein HAT5 | ||||
Swissprot | Q02283 | 5e-82 | HAT5_ARATH; Homeobox-leucine zipper protein HAT5 | ||||
TrEMBL | B9RUU7 | 1e-154 | B9RUU7_RICCO; Homeobox protein, putative | ||||
STRING | XP_002517348.1 | 1e-155 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11283 | 30 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G01470.1 | 6e-78 | homeobox 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | 29822.m003350 |
Entrez Gene | 8269319 |
Publications ? help Back to Top | |||
---|---|---|---|
|