PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29814.m000741
Common NameRCOM_0839570
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family Trihelix
Protein Properties Length: 274aa    MW: 31419.6 Da    PI: 8.8903
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29814.m000741genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix44.83.2e-1422105186
       trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergf..erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                    +W++  + +Liea  ++  +l+rg+l++++W+ev++++  r+ g+  +++ +qCk++++ l+k+yk +k+          s++p++ +l+
  29814.m000741  22 CWSEGATETLIEAWGDRYVNLNRGNLRQKDWKEVADAVnsRQNGVkpKKTDIQCKNRIDTLKKKYKIEKAKPPP------SKWPFYYRLD 105
                    7*************************************88777776678999***************9998886......5799999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.5E-2720107No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MDPATWSIIL HHSRAGGGRE DCWSEGATET LIEAWGDRYV NLNRGNLRQK DWKEVADAVN  60
SRQNGVKPKK TDIQCKNRID TLKKKYKIEK AKPPPSKWPF YYRLDSLVGV NNHPTKRKPN  120
AVTLTVKRKP AVYSSTETTS FHEEEEDVGF DERVIKKEHR MEDVDCSDGA ACRELARAIL  180
KFGEIYERIE SSKQQQMFEL EKQRMEFTKE VEFERLNLFM DAQLELEKQA LKRAKYASST  240
PVCQAPLPSY GKVDGSLLKG NDLPSLGVLH STNR
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00488DAPTransfer from AT5G05550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap29814.m000741
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015580325.10.0trihelix transcription factor ASIL2
SwissprotQ9LJG81e-32ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLB9SQQ10.0B9SQQ1_RICCO; Transcription factor, putative
STRINGXP_002528320.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18873379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.23e-69sequence-specific DNA binding transcription factors