PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29814.m000735
Common NameLOC8265375, RCOM_0838610
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 288aa    MW: 31366.3 Da    PI: 8.474
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29814.m000735genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.84e-1386132354
                    HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    ++h+++E+rRRdriN+ +  Lr+l+Pk+     +K++Ka+ L  A++ +k+L
  29814.m000735  86 KSHSQAEKRRRDRINTQLGILRKLIPKS-----EKMDKAALLGSAIDQVKDL 132
                    68*************************8.....8*************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.80583132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-1284136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-1386135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.45E-986133No hitNo description
PfamPF000101.0E-1086132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-1189138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2607.6E-5182225No hitNo description
CDDcd048732.16E-7183220No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MEEDHYTSSW PAVTADANWV PTNSAAYDES LLFPLSVPSN ASASTTFQVN EFPSWLIPIQ  60
ENVNGISSWS MPVQDSAENK AASVSKSHSQ AEKRRRDRIN TQLGILRKLI PKSEKMDKAA  120
LLGSAIDQVK DLKGKAMEVS KTITIPTEFD EVTVDIDDSN DVFQHLSTTS TAHKDKDNIF  180
IRVSVCCDDR PEVFSELIRV LKGLRLSIVR ADISSVGGRV KSILILCNKD SKEGGGSGSG  240
SNGGGGGGVS LSTIKQSLNV VLSRISSSSM PSNYRIRSKR QRFFLPSQ
Cis-element ? help Back to Top
SourceLink
PlantRegMap29814.m000735
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002528314.10.0transcription factor bHLH51
RefseqXP_025014754.10.0transcription factor bHLH51
TrEMBLB9SQP50.0B9SQP5_RICCO; Uncharacterized protein
STRINGXP_002528314.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57963351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.17e-46bHLH family protein