PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29813.m001503
Common NameRCOM_0836880
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family Dof
Protein Properties Length: 389aa    MW: 42204.1 Da    PI: 8.2127
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29813.m001503genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof711.7e-2260962662
         zf-Dof 26 lsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                   +++Pr+fCk+C+ryWt+GG++rnvPvG+grrknk+ss
  29813.m001503 60 TNRPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSSS 96
                   689*******************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088415.4634094IPR003851Zinc finger, Dof-type
PfamPF027019.3E-165994IPR003851Zinc finger, Dof-type
ProDomPD0074781.0E-125993IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MSEGIKLFGK TIPLPALYHL SSANDPCSQA TGDDLDDFSD KTTASLHEYD SVKEQQAQDT  60
NRPRHFCKNC QRYWTAGGTM RNVPVGAGRR KNKSSSASHY RHIIVSEALR TAQGHALNGV  120
HNPSFGSSST VLTFGADSPL CESVASVLNL SEKNGYHRPE QRILVPCGRT ADNGDDRLSR  180
NSVTASNALE KGGKRVSQET VTKNYQGIAP QIPCFPGPPW PYPWSSPLPT PPTFCPSGFP  240
VSFYPAPAYW GCTVPNPWNV PPCLSPQSPS VNHRAAASLS PTSPLGKHSR EGNILKPVNS  300
EEPSGESNCT ERSVLAPKAL RIDDPTEAVT SSIWATLGIK CEKTNLNGGL FEGFQSKNEN  360
RNYIAERKSS VLQVNPAALS WSLNFHEST
Cis-element ? help Back to Top
SourceLink
PlantRegMap29813.m001503
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015576784.10.0cyclic dof factor 3
TrEMBLB9S8Y20.0B9S8Y2_RICCO; Uncharacterized protein
STRINGXP_002522451.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62534147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47500.18e-54cycling DOF factor 3