PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29813.m001479
Common NameLOC8260626, RCOM_0836330
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NAC
Protein Properties Length: 411aa    MW: 46278.9 Da    PI: 7.4961
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29813.m001479genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.81.8e-52141411128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                    + pGfrFhPtdeelv +yLk+k+++++l++ e ik++diyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++++s+ 
  29813.m001479  14 MLPGFRFHPTDEELVGFYLKRKIQQRPLSI-ELIKQLDIYKYDPWDLPKLATTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSe 108
                    579***************************.89***************8888999***************************************95 PP

            NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                    +++ +glkk+Lvfykgra kg ktdW+mhe+rl
  29813.m001479 109 GNKCIGLKKSLVFYKGRAAKGIKTDWMMHEFRL 141
                    6667***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-5812173IPR003441NAC domain
PROSITE profilePS5100557.0114173IPR003441NAC domain
PfamPF023651.7E-2516141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0045770Biological Processpositive regulation of asymmetric cell division
GO:0048103Biological Processsomatic stem cell division
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MDERNEADKM DEVMLPGFRF HPTDEELVGF YLKRKIQQRP LSIELIKQLD IYKYDPWDLP  60
KLATTGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSEGN KCIGLKKSLV  120
FYKGRAAKGI KTDWMMHEFR LPSLTDSASP AKRFLDKTIP VNDSWAICRI FKKTNSTAQR  180
ALSQSWVSSI PETAPSSFLA KASQNTQFCS QNTSLTTDIS NYYNNEIQQS FVTNFSPLDF  240
SSFKPLNPLS SKLSHNPHSI SNGDLHGNFF FSHLETLAPS KCTVDVSSML LNMSSSVLGD  300
FSKAANDHQS SIDYGGVPQD HCSDFSSLTS FPQAMQVNNA SHGDENMPLK NPNAMTNIDD  360
QWETVRSSVG FPFSLPMSMG TDAWKQNLLW DSSSCPSDQI STSFATAKCY T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-5551807171NO APICAL MERISTEM PROTEIN
1ut4_B4e-5551807171NO APICAL MERISTEM PROTEIN
1ut7_A4e-5551807171NO APICAL MERISTEM PROTEIN
1ut7_B4e-5551807171NO APICAL MERISTEM PROTEIN
4dul_A4e-5551807171NAC domain-containing protein 19
4dul_B4e-5551807171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap29813.m001479
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002522427.10.0protein FEZ
SwissprotQ9ZVH01e-114FEZ_ARATH; Protein FEZ
TrEMBLB9S8V80.0B9S8V8_RICCO; NAC domain-containing protein, putative
STRINGXP_002522427.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20133490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.11e-113NAC family protein
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]