PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29801.m003198
Common NameLOC8275316, RCOM_0813700
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB_related
Protein Properties Length: 478aa    MW: 54168.2 Da    PI: 9.8088
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29801.m003198genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.21.2e-10429476347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      rW+ eE++ l + v+++G g+Wk+I +        Rt+ ++k++w++ 
    29801.m003198 429 RWSVEEEDALRESVQRFGRGNWKLILNSKRhifVDRTEVDLKDKWRNM 476
                      9*********************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.953422478IPR017930Myb domain
SuperFamilySSF466891.05E-13424477IPR009057Homeodomain-like
SMARTSM007174.0E-4426478IPR001005SANT/Myb domain
CDDcd116602.16E-16428478No hitNo description
PfamPF002495.7E-9429476IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-11429478IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MDPGITCWIL EFLARQPISQ LLLNKILTNT HIPIASINNP RFKKALLLRS IHDEIANGSA  60
SSETILQSLE TIEELDNTHI ADSMKLAYQA VAVDCTLKWV IEKHDKGQFF KAVKRIWRGR  120
IERLESLKKS ELVTDELKEI KQEIEAALWD SNARKRLLDR NIKSESLRLV KDYLNEALDK  180
RGPSFLELAA KVETEMKEKQ KGAVQVGLES AVVDGPAGRE SLKNDMPDTF CQRPGGIKDT  240
ERAHMNILSF KYNPLLTPEV TKVKEALKSS SLELKALVED PLPNALHLSE ALIAEEKRKA  300
LAKETAVKTW SGKGVDVPNP SISPVISQAA KRILNPVPSA EELNLPVTQT MKTNTMISVS  360
SHQNIDPKRS LMDCNSTART FEWDDSIDGS PEETANPISR FELNGPRRKA VSSLKNNITK  420
FARRRKIKRW SVEEEDALRE SVQRFGRGNW KLILNSKRHI FVDRTEVDLK DKWRNMTR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1406425RRKAVSSLKNNITKFARRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMap29801.m003198
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002518779.10.0uncharacterized protein LOC8275316 isoform X2
TrEMBLB9RYJ50.0B9RYJ5_RICCO; Uncharacterized protein
STRINGXP_002518779.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28243260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06910.11e-14TRF-like 7