PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29794.m003366
Common NameRCOM_0798670
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB_related
Protein Properties Length: 321aa    MW: 34966.7 Da    PI: 5.8509
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29794.m003366genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding285.1e-09841062346
                      -HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  23 tWktIartmgkgRtlkqcksrwqk 46 
                       W++Ia++++ gRt++++k++w++
    29794.m003366  84 LWSLIASHLP-GRTDNDVKNYWNT 106
                      6*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-20535IPR009057Homeodomain-like
SMARTSM007171.1E-1313110IPR001005SANT/Myb domain
SuperFamilySSF466891.99E-1114109IPR009057Homeodomain-like
CDDcd001677.66E-716106No hitNo description
PROSITE profilePS512949.44259112IPR017930Myb domain
PfamPF002496.6E-784106IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-2084112IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDATLTRYLE AHGTGGNWIA LPHKAGKKEE AENAPIVQMR  60
VRNKLKWPQN LVAKLPPFLG INELWSLIAS HLPGRTDNDV KNYWNTKLKK KLFGGKTGLE  120
NQKNSSNITA SANYSHNPNP ITTDPNCLTS SSLPSVQKTE TNFSLTFWDS LTQSYESIVS  180
STNTQSLDLD NPVHFSLPGI LDMSELGGNF INSHIVSPSQ EGSSISDSSS IAMDNKCTAN  240
ISLPSNNAGF EDAAAAGVLM DSGFSFPIDP VNFNGLLFQD KGSHQVASST YYPDLDDYGY  300
AAAETKQQGQ NQSQADRKEH P
Cis-element ? help Back to Top
SourceLink
PlantRegMap29794.m003366
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015573108.11e-179transcription factor RAX2 isoform X1
TrEMBLB9RRW80.0B9RRW8_RICCO; R2r3-myb transcription factor, putative
STRINGXP_002516487.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36890.11e-35MYB family protein