PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29794.m003304

Common Name

RCOM_0797260

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

C2H2

Protein Properties

Length: 446aa MW: 49419.8 Da PI: 9.3667

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29794.m003304	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.4	2.6e-05	25	47	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H 29794.m003304 25 FICEICNKGFQRDQNLQLHRRGH 47 89*******************88 PP
2	zf-C2H2	12.7	0.00039	101	123	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H + + 29794.m003304 101 WKCEKCSKRYAVQSDWKAHSKIC 123 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.2E-5	24	47	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	8.29E-7	24	47	No hit	No description
Pfam	PF12171	5.2E-5	25	47	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.022	25	47	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.845	25	47	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	27	47	IPR007087	Zinc finger, C2H2
SMART	SM00355	230	66	96	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	2.0E-4	89	122	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	8.29E-7	96	121	No hit	No description
SMART	SM00355	130	101	121	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence Send to blast
MGFGADPDAE VIALSPKTLM ATNRFICEIC NKGFQRDQNL QLHRRGHNLP WKLKQRTNKE 60 VRKKVYVCPE TTCVHHDPSR ALGDLTGIKK HFCRKHGEKK WKCEKCSKRY AVQSDWKAHS 120 KICGTREYRC DCGTLFSRRD SFITHRAFCD ALAEESARAI TLNPLLASQQ QQPSSSASHH 180 MINLQSLSSS VKREQDQNHH LFSPRPDHHN VPPWLGEAAV GPGPLLPQQI SNLSSQLIPS 240 NLDRRHHPFL QHNENPSPNP NNLTLPPYPP HTASPHMSAT ALLQKAAQMG VTISKPSPSP 300 AAAAAVMLRP HQQAHMSVNT AGFSSTSVVA TSAAGNTSGL RLSSREDIRS GFGHGLTSFG 360 NKATATSGII DHHQMATDSS LVHDMMNFDE DFNGMLNPKR DVIAALGRLN SCSTTNYGQQ 420 QNHNQSPLAS LWWDDLPRLG FFILKE

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence Send to blast

MGFGADPDAE VIALSPKTLM ATNRFICEIC NKGFQRDQNL QLHRRGHNLP WKLKQRTNKE  60
VRKKVYVCPE TTCVHHDPSR ALGDLTGIKK HFCRKHGEKK WKCEKCSKRY AVQSDWKAHS  120
KICGTREYRC DCGTLFSRRD SFITHRAFCD ALAEESARAI TLNPLLASQQ QQPSSSASHH  180
MINLQSLSSS VKREQDQNHH LFSPRPDHHN VPPWLGEAAV GPGPLLPQQI SNLSSQLIPS  240
NLDRRHHPFL QHNENPSPNP NNLTLPPYPP HTASPHMSAT ALLQKAAQMG VTISKPSPSP  300
AAAAAVMLRP HQQAHMSVNT AGFSSTSVVA TSAAGNTSGL RLSSREDIRS GFGHGLTSFG  360
NKATATSGII DHHQMATDSS LVHDMMNFDE DFNGMLNPKR DVIAALGRLN SCSTTNYGQQ  420
QNHNQSPLAS LWWDDLPRLG FFILKE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-35	97	163	3	69	Zinc finger protein JACKDAW
5b3h_F	1e-35	97	163	3	69	Zinc finger protein JACKDAW
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	51	63	KLKQRTNKEVRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29794.m003304

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM438262	1e-125	AM438262.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X063445.19, clone ENTAV 115.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015573181.1	0.0	protein indeterminate-domain 7
Swissprot	Q8H1F5	1e-108	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	B9RRQ7	0.0	B9RRQ7_RICCO; Nucleic acid binding protein, putative
STRING	XP_002516426.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF181	34	275

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	1e-108	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	29794.m003304

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]