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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29790.m000811 | ||||||||
Common Name | RCOM_0789870 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | MYB_related | ||||||||
Protein Properties | Length: 217aa MW: 25156.3 Da PI: 6.7161 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 63.7 | 3.5e-20 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ll ++vk++G g+W+++a + g++R++k+c++rw +yl 29790.m000811 13 KGPWTPEEDKLLSEYVKLHGEGRWSSVAMYAGLNRSGKSCRLRWVNYL 60 79********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.953 | 8 | 64 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.0E-23 | 9 | 63 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.2E-18 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-19 | 13 | 60 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.58E-22 | 14 | 87 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.79E-13 | 15 | 60 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.2E-6 | 64 | 87 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MVGWGIPEQG WKKGPWTPEE DKLLSEYVKL HGEGRWSSVA MYAGLNRSGK SCRLRWVNYL 60 RPGLKRSQIT PQEEGIIIEL HALWGNKTHF KRKGKTSKKQ EKLLDSQDLE QQQQEQQEQQ 120 HQLGDDMKMV TNTSDENMHE IQGKQENMVF KYPTLGDQCL PVMSQDVTSW TDFLMDDGLI 180 WGGLWNFDDQ VVHHTSNCSK IAKQNQNNYY HNGGCIF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-13 | 5 | 87 | 1 | 80 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29790.m000811 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX584688 | 3e-33 | JX584688.1 Gossypium hirsutum clone NBRI_GE18056 microsatellite sequence. | |||
GenBank | KM034650 | 3e-33 | KM034650.1 Jatropha curcas clone JcMYB030 MYB family protein gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015578909.1 | 1e-146 | transcription factor MYB82 | ||||
TrEMBL | B9SIU5 | 1e-161 | B9SIU5_RICCO; R2r3-myb transcription factor, putative | ||||
STRING | XP_002525914.1 | 1e-162 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1182 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G30210.1 | 5e-47 | myb domain protein 121 |
Link Out ? help Back to Top | |
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Phytozome | 29790.m000811 |