PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29780.m001358 | ||||||||
Common Name | RCOM_0775400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | bHLH | ||||||||
Protein Properties | Length: 446aa MW: 49195.2 Da PI: 7.1281 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.9 | 9.7e-05 | 343 | 375 | 18 | 55 |
HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 18 safeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ L++++ + +K + a++L +A++YIk Lq 29780.m001358 343 DRITALQQIVSPF-----GKTDTASVLLEAIQYIKFLQ 375 7788888888887.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.461 | 325 | 374 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.06E-10 | 340 | 391 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.1E-9 | 340 | 383 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.60E-5 | 343 | 379 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 446 aa Download sequence Send to blast |
MAQECSGSSV AISSSTPPAV GCWWDLHHHH ASSLSPWHQP NPSSNSSCEE DVSMSTSFTN 60 ASNHSGLTVE SSRRLVEPAA SSPNELIGEH ASDSQLWSHI LLGVGSNGEL QNNQDVGENL 120 LDALSSRSIN SSGIFEPACD YLKKIDHNWE FTSSFNNFEK HINGFSTDHH HQSLIESDQR 180 VTKLSNLVEN DHEHQNHHRH VEAPAAGYVL RRSTFNNNGA GVGYHIGLNN GSVMADNSKY 240 YYGTTENTSA RTFNDGLTFN GRLNKPLIDI QGHKPCFKSL NLSDCRKQGL QASSQTVRGQ 300 GNSSEGKKKR YEDTSETIPK KPKHESSTAS SVKTQAPKVK LGDRITALQQ IVSPFGKTDT 360 ASVLLEAIQY IKFLQEQVQL LSNPYMKSNS HKDPWGGLDK KAQGDAKVDL RSRGLCLVPI 420 SCTPQIYHEN TGSDYWTPTY RGCLYR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29780.m001358 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015576451.1 | 0.0 | transcription factor bHLH111 | ||||
TrEMBL | B9S7A5 | 0.0 | B9S7A5_RICCO; Uncharacterized protein | ||||
STRING | XP_002521874.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10116 | 26 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31050.1 | 1e-76 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | 29780.m001358 |