PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29771.m000072 | ||||||||
Common Name | RCOM_0766690 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | WRKY | ||||||||
Protein Properties | Length: 215aa MW: 24333.8 Da PI: 7.3781 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.1 | 4.8e-30 | 118 | 176 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +dDg++WrKYG+K+vk+s++pr+YY+C+s gC+vkk+ver++edpk+v++tY g Hnh+ 29771.m000072 118 MDDGFKWRKYGKKSVKNSPHPRNYYKCSSGGCSVKKRVERDREDPKYVITTYDGMHNHQ 176 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.2E-32 | 105 | 178 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.57E-27 | 111 | 178 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.559 | 113 | 178 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.7E-33 | 118 | 177 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.1E-23 | 119 | 176 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MFDSSFLAMD YPANPNPNNY NYSHFDPIMD PSLQPVEFQL SDFLMLDGGF GDDSSSQSTM 60 VLSDQFASGA STEYSSGTAA SATSENANND KWKKGVKKEK AEVGHRVAFR TKSELEIMDD 120 GFKWRKYGKK SVKNSPHPRN YYKCSSGGCS VKKRVERDRE DPKYVITTYD GMHNHQTPCV 180 VYYNHHHRHH YHQDQVPVMN PNGWNLQASS PSSSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-26 | 108 | 178 | 7 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 3e-26 | 108 | 178 | 7 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29771.m000072 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002533354.3 | 1e-162 | probable WRKY transcription factor 51 | ||||
TrEMBL | B9T535 | 1e-161 | B9T535_RICCO; WRKY transcription factor, putative | ||||
STRING | XP_002533354.1 | 1e-162 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1120 | 34 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26170.1 | 7e-40 | WRKY DNA-binding protein 50 |
Link Out ? help Back to Top | |
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Phytozome | 29771.m000072 |