PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29770.m000336
Common NameLOC8289557, RCOM_0766230
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NAC
Protein Properties Length: 343aa    MW: 39422.1 Da    PI: 4.7088
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29770.m000336genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM180.93.2e-5661331128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                    lppGfrFhPtdeelv +yL +k++g+++el e+i+evd+yk+ePwdLp k  + +++ ewyf+s+rdkky++g+r+nrat++gyWkatgkd++v+s
  29770.m000336   6 LPPGFRFHPTDEELVAYYLDRKINGRSIEL-EIIPEVDLYKCEPWDLPdKsFLPSKDLEWYFYSPRDKKYPNGSRTNRATRAGYWKATGKDRPVHS 100
                    79****************************.99**************96434555777************************************** PP

            NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +++ vg+kktLv+y+grap+g +t+Wvmheyrl
  29770.m000336 101 -QRQPVGMKKTLVYYRGRAPHGIRTNWVMHEYRL 133
                    .999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.62E-643157IPR003441NAC domain
PROSITE profilePS5100559.9456157IPR003441NAC domain
PfamPF023657.2E-297133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MAPMSLPPGF RFHPTDEELV AYYLDRKING RSIELEIIPE VDLYKCEPWD LPDKSFLPSK  60
DLEWYFYSPR DKKYPNGSRT NRATRAGYWK ATGKDRPVHS QRQPVGMKKT LVYYRGRAPH  120
GIRTNWVMHE YRLIYSLCGA ASSSLKDSYA LCRVFKKTIQ VNPKTKEEKN GKIIDKDDTC  180
VSDEQFFAED ISGSETFKGR EQTEDEHLNN DYSKFPSETS SSDVTQGTPI ETPIPDDSQA  240
PFASDEANSS VNMYSLGMDF SNLLQDMQIP SYSNMHYQLP YPPIELEGFP QINIAETKPR  300
KCEIMEEYMT YDKYTDCMNG TLEEIFSLCA SQDNSIAFSI QED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-58115712165NO APICAL MERISTEM PROTEIN
1ut4_B8e-58115712165NO APICAL MERISTEM PROTEIN
1ut7_A8e-58115712165NO APICAL MERISTEM PROTEIN
1ut7_B8e-58115712165NO APICAL MERISTEM PROTEIN
4dul_A8e-58115712165NAC domain-containing protein 19
4dul_B8e-58115712165NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00205DAPTransfer from AT1G54330Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap29770.m000336
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002527580.10.0NAC domain-containing protein 45
TrEMBLB9SNL10.0B9SNL1_RICCO; Transcription factor, putative
STRINGXP_002527580.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105083341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54330.11e-111NAC domain containing protein 20