PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29764.m000758 | ||||||||
Common Name | RCOM_0757170 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | NAC | ||||||||
Protein Properties | Length: 597aa MW: 66639.7 Da PI: 5.1522 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 165 | 2.7e-51 | 9 | 136 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lp GfrF+Ptdeelv++yL+ k++g++ ++ +vi+e+d++k+ePwdLp + +k++++ew+fF++ d+ky++g+r nrat++gyWkatgkd++++s 29764.m000758 9 LPLGFRFRPTDEELVNFYLRLKINGNDKDV-RVIRELDVCKWEPWDLPdMsIIKTNDQEWFFFCPLDRKYPNGHRLNRATSKGYWKATGKDRKIKS 103 699************************999.99**************96347788999************************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++l+g+kktLvfy+grap+g++t+Wv+heyr+ 29764.m000758 104 -GNTLIGMKKTLVFYTGRAPRGTRTHWVIHEYRA 136 .999****************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.66E-61 | 4 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.948 | 9 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.5E-26 | 10 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0002230 | Biological Process | positive regulation of defense response to virus by host | ||||
GO:0002237 | Biological Process | response to molecule of bacterial origin | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0003713 | Molecular Function | transcription coactivator activity | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 597 aa Download sequence Send to blast |
MAVLSLNSLP LGFRFRPTDE ELVNFYLRLK INGNDKDVRV IRELDVCKWE PWDLPDMSII 60 KTNDQEWFFF CPLDRKYPNG HRLNRATSKG YWKATGKDRK IKSGNTLIGM KKTLVFYTGR 120 APRGTRTHWV IHEYRATEDD LDGTKPGQNP FVICRLFKKQ DDTVENLNLD EHEATTLLSP 180 TAPQSSLEAA ESDLALAQVN TPNECSNAFV EGDQTADLAV LEEDTQLEED LNWFIQPPGP 240 LDDKLFSPLH AQVQAEGGST YYTSGNDLGD HNNNGGTNET DAAYVTNFLN DILQQPVEYS 300 FDESGCINPI AFDEDSEAFG GLDVKRTQIV VSGHNQIIVQ CGSLEEELQS SIWTEDDIDR 360 KPSLHIETTP GDYRTATYDL SRNLGSVCHE KQNLASSSAA DQFSSSKESN PMNQIGSSES 420 PGTGIRIRAR NAQNLPIFSN SATQGLASRR LRLQCKLQVQ PLCFGEISID GSSISKEHIL 480 EETVLEEVKV TEKDTSHSVG SSSIIDGNKH QKPSVSEARE HIKFSEEITS NSGNIMRKRS 540 NAVSKKVPSI PLKASSTHHP MWSKSMLRVV VLLSLLLILA SIWRCLFLKP LRDLIPL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-46 | 4 | 160 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-46 | 4 | 160 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-46 | 4 | 160 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-46 | 4 | 160 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-46 | 4 | 160 | 15 | 169 | NAC domain-containing protein 19 |
3swm_B | 7e-46 | 4 | 160 | 15 | 169 | NAC domain-containing protein 19 |
3swm_C | 7e-46 | 4 | 160 | 15 | 169 | NAC domain-containing protein 19 |
3swm_D | 7e-46 | 4 | 160 | 15 | 169 | NAC domain-containing protein 19 |
3swp_A | 7e-46 | 4 | 160 | 15 | 169 | NAC domain-containing protein 19 |
3swp_B | 7e-46 | 4 | 160 | 15 | 169 | NAC domain-containing protein 19 |
3swp_C | 7e-46 | 4 | 160 | 15 | 169 | NAC domain-containing protein 19 |
3swp_D | 7e-46 | 4 | 160 | 15 | 169 | NAC domain-containing protein 19 |
4dul_A | 6e-46 | 4 | 160 | 12 | 166 | NAC domain-containing protein 19 |
4dul_B | 6e-46 | 4 | 160 | 12 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator essential for the anti-viral defense called virus basal resistance response pathway (PubMed:11041886, PubMed:15629774, PubMed:18785827, PubMed:24418554). Not involved in HRT-mediated hypersensitive response (HR) and resistance to TCV (PubMed:18785827). Binds DNA non specifically (PubMed:15629774). Activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). {ECO:0000250|UniProtKB:Q9SCK6, ECO:0000269|PubMed:11041886, ECO:0000269|PubMed:15629774, ECO:0000269|PubMed:18785827, ECO:0000269|PubMed:24418554}.; FUNCTION: (Microbial infection) Compromised function in defense response pathway when interacting with the invading viral capsid protein (CP) of turnip crinkle virus (TCV) due to abnormal subcellular localization. {ECO:0000269|PubMed:11041886, ECO:0000269|PubMed:15629774}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29764.m000758 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by bacterial pathogens type III effector proteins (TTEs). {ECO:0000269|PubMed:16553893}.; INDUCTION: (Microbial infection) Accumulates 2 days post infection with turnip crinkle virus (TCV) (PubMed:24418554). {ECO:0000269|PubMed:24418554}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015576086.1 | 0.0 | NAC domain-containing protein 62 | ||||
Swissprot | Q9LKG8 | 1e-105 | NAC91_ARATH; NAC domain-containing protein 91 | ||||
TrEMBL | B9S5P3 | 0.0 | B9S5P3_RICCO; Transcription factor, putative | ||||
STRING | XP_002521312.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5551 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24590.2 | 1e-100 | TCV-interacting protein |
Link Out ? help Back to Top | |
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Phytozome | 29764.m000758 |
Publications ? help Back to Top | |||
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