PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29761.m000413
Common NameRCOM_0750140
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C2H2
Protein Properties Length: 265aa    MW: 29547.5 Da    PI: 8.4549
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29761.m000413genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00065199221223
                    EETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                    +Cp C+ +Fs+  +L+ H ++ H
  29761.m000413 199 ECPQCHARFSSVTTLVEHVQKlH 221
                    5******************9988 PP
2zf-C2H217.11.6e-05237259223
                    EETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                    +Cp+C+k F+++  L+ H  + H
  29761.m000413 237 VCPKCSKGFRDPVALVEHVERdH 259
                    7*****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1110.103.9E-1067121IPR000058Zinc finger, AN1-type
SuperFamilySSF1183108.37E-970119No hitNo description
PfamPF014287.9E-878118IPR000058Zinc finger, AN1-type
SMARTSM003550.033198221IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.538198226IPR007087Zinc finger, C2H2
PROSITE patternPS000280200221IPR007087Zinc finger, C2H2
PROSITE profilePS501578.85236264IPR007087Zinc finger, C2H2
SMARTSM003555.4236259IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280238259IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MIVLPWNHCH VFCLEHRSYA KHDCPKADSK DVTVVICPLC AKGVRLNPDE DPNLSWESHV  60
NTECDPSNYE KVTKKRKCPV RGCREVLRFS NTIKCRDCTI DHCLKHRFGP DHDCPGPKKP  120
ELGFQFLSLL NRSKKEDSKL NQTPAASSTK WSAAFRNAAS SVRASAEAGM TKLSSEISQA  180
WQTATNGAGP SSSNRLEEEC PQCHARFSSV TTLVEHVQKL HERNGNRSRV MNLPVDVCPK  240
CSKGFRDPVA LVEHVERDHG GTSKA
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap29761.m000413
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, dehydration and salt stress. {ECO:0000269|PubMed:17033811}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015581133.10.0zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
SwissprotQ0D5B91e-107SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBLB9SUE30.0B9SUE3_RICCO; Arsenite inducuble RNA associated protein aip-1, putative
STRINGXP_002529612.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58643351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-105C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]