PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

FAR1

Protein Properties

Length: 656aa MW: 75891.7 Da PI: 6.2153

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29758.m000681	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	69.2	1e-21	33	124	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 ++Y ++A++ GFs+rk++s+ s + g i+kr+fvC+++g++ +kk + +++r r++ r+gC+ak+ ++ke ++w v ++++ HnHel 29758.m000681 33 EYYGNFARRNGFSIRKERSRLSPQLG-IYKRDFVCYRSGFAPARKKPSGEHHRDRKSVRCGCDAKMYLSKEVvdgVSQWFVVQFSNVHNHELL 124 59******************8888.***************************************99867789***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-19	33	124	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.4E-18	256	348	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.373	528	563	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.6E-8	529	563	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.7E-6	538	565	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 656 aa Download sequence Send to blast
MASQLVKNNT FQSEAMVAPY VGMVFKSDDD AFEYYGNFAR RNGFSIRKER SRLSPQLGIY 60 KRDFVCYRSG FAPARKKPSG EHHRDRKSVR CGCDAKMYLS KEVVDGVSQW FVVQFSNVHN 120 HELLEDDQVR LLPAYRKIQE ADQERILLLS KAGFPIHRIV KVLELEKGIQ GGQLPFLERD 180 VRNFVQNRKK IVQETDALLT EKRENDAMEL LEACKAAKEV DEEFVYEYTV DEHDKVENVA 240 WSYGDSVCAY ALFGDVVYFD TSYRSITYGM LFGAWLGIEN NGKIVFFGCV LLQDETPHSF 300 VWALQAFIRF MKGKCPETIL SDLDMGLKDA ISSELPSTKH VISMWNILPK VYSWFSLPLG 360 TQYGEFKSKF DELYQIERTE EFELRWSQMV SMFGLGSDKH IALLNSLRAS WALSYVRGYF 420 LARMATSTYS KSVDAFLKGV CSAQTCLRSF FEQIGISANF LNQTHREMQY MLMKTCIPVE 480 GHAHGILTPF AFSALQHELV LAMQYALSEM ADGSYLVNHF KKMDGEHFVI WIPEDEQIHC 540 SCKEFESSGI LCRHALRVFI QKNYFQLPEK YYLSRWRQDC SLVFYDEQLT QSNDGVWLQE 600 YHSLTETLFR ESSITKERFD FVHRELPKEL TRLLGEVRQM LESDGVAMNL TLSPTD

Sequence ? help Back to Top

Protein Sequence Length: 656 aa Download sequence Send to blast

MASQLVKNNT FQSEAMVAPY VGMVFKSDDD AFEYYGNFAR RNGFSIRKER SRLSPQLGIY  60
KRDFVCYRSG FAPARKKPSG EHHRDRKSVR CGCDAKMYLS KEVVDGVSQW FVVQFSNVHN  120
HELLEDDQVR LLPAYRKIQE ADQERILLLS KAGFPIHRIV KVLELEKGIQ GGQLPFLERD  180
VRNFVQNRKK IVQETDALLT EKRENDAMEL LEACKAAKEV DEEFVYEYTV DEHDKVENVA  240
WSYGDSVCAY ALFGDVVYFD TSYRSITYGM LFGAWLGIEN NGKIVFFGCV LLQDETPHSF  300
VWALQAFIRF MKGKCPETIL SDLDMGLKDA ISSELPSTKH VISMWNILPK VYSWFSLPLG  360
TQYGEFKSKF DELYQIERTE EFELRWSQMV SMFGLGSDKH IALLNSLRAS WALSYVRGYF  420
LARMATSTYS KSVDAFLKGV CSAQTCLRSF FEQIGISANF LNQTHREMQY MLMKTCIPVE  480
GHAHGILTPF AFSALQHELV LAMQYALSEM ADGSYLVNHF KKMDGEHFVI WIPEDEQIHC  540
SCKEFESSGI LCRHALRVFI QKNYFQLPEK YYLSRWRQDC SLVFYDEQLT QSNDGVWLQE  600
YHSLTETLFR ESSITKERFD FVHRELPKEL TRLLGEVRQM LESDGVAMNL TLSPTD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29758.m000681

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002525089.2	0.0	putative protein FAR1-RELATED SEQUENCE 10
Refseq	XP_015578391.1	0.0	putative protein FAR1-RELATED SEQUENCE 10
Swissprot	Q9LKR4	0.0	FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBL	B9SGH0	0.0	B9SGH0_RICCO; Uncharacterized protein
STRING	XP_002525089.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF594	30	113

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	0.0	FAR1-related sequence 10

Link Out ? help Back to Top
Phytozome	29758.m000681

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]