PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29747.m001045
Common NameRCOM_0722880
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C2H2
Protein Properties Length: 404aa    MW: 45504.5 Da    PI: 6.7463
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29747.m001045genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.00092348369122
                    EEETTTTEEESSHHHHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirt 22 
                    y C++C+k+Fs+   L  H   
  29747.m001045 348 YACNICSKRFSTGQALGGHKTY 369
                    89*********99888777655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.16E-5262290No hitNo description
PfamPF139121.0E-5263287IPR007087Zinc finger, C2H2
PROSITE profilePS501579.764264291IPR007087Zinc finger, C2H2
SMARTSM003550.043264286IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280266286IPR007087Zinc finger, C2H2
SMARTSM003550.25299321IPR015880Zinc finger, C2H2-like
SuperFamilySSF576678.41E-8299370No hitNo description
PROSITE profilePS501579.307299326IPR007087Zinc finger, C2H2
PfamPF139126.6E-4299322IPR007087Zinc finger, C2H2
PROSITE patternPS000280301321IPR007087Zinc finger, C2H2
SMARTSM003550.37348370IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.702348370IPR007087Zinc finger, C2H2
PfamPF139125.8E-10348372IPR007087Zinc finger, C2H2
PROSITE patternPS000280350370IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MAFTVNIDVA TNNTKDNDGS KSESRSSVST ESYCYHGHDK MDDDHNSCCS ATGVYHSHGD  60
NKIEDDYAVS TTPEDKEPVD LMRVLPTSWP NDTRKKRATV VSETSNTEVL ERVKDELRFQ  120
FGRLNEVRKA PDLKNEQFKV VERIKELLVQ QSHVFLQSNG IDETSIFSIL QINADAQDES  180
GQSQSEKVYE TISRVLQEII LDRKDSGIED NTTHNPNNPD GTNEGVTRTN VNDTMSLRNE  240
PMQKKNRELK LKNQPQFIRL NRRYECKECK QIFNDFRALG GHMASHNRKN MSDIVKTSYE  300
CRVCNVVFDD FRALGGHIAS HNRKKRAHET ASDPGLVAES VGSRQKFYAC NICSKRFSTG  360
QALGGHKTYH RKIADALGIQ ASSGTSPGLE LDLNAAPDER LWGV
Cis-element ? help Back to Top
SourceLink
PlantRegMap29747.m001045
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB9SFT10.0B9SFT1_RICCO; Uncharacterized protein
STRINGXP_002524850.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.11e-15C2H2 family protein