PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29739.m003611
Common NameLOC8258576, RCOM_0707130
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family Trihelix
Protein Properties Length: 610aa    MW: 69831.3 Da    PI: 6.798
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29739.m003611genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix95.45.2e-30418502186
       trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                    rW+k ev aLi++r+++e+++++  lk+plWeevs+ m++ g++r +k+Ckekwen+nk+++k ke+ kkr s++s+tc+yf+ql+
  29739.m003611 418 RWPKAEVEALIQVRTNIETKFQEPGLKGPLWEEVSSIMSSMGYQRCAKRCKEKWENINKYFRKAKESTKKR-SQQSKTCSYFNQLN 502
                    8*********************************************************************8.78889*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122034.06E-24417482No hitNo description
PROSITE profilePS500906.713417475IPR017877Myb-like domain
PfamPF138373.4E-20417504No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 610 aa     Download sequence    Send to blast
MQHHCYNNNG VPDIHNHQQH DHHHHHHHRH QELIENDECF SISNPLQNLT HPDYQLSSQQ  60
NKQQQQQQLL LQHQHQVQHQ HSIPITHQLL QPHFRPAFQQ QQQEVEGLLH SQIVATRQHQ  120
PFFLKFKLGL EQTSSSNKEC ALNHHNSTPH VPVIMQPPHH SWKDSTSSIR EPFWKQLNTS  180
NIKQQFENGE QEAVQGNNKN NKDLENKYSH FGGELEAIYN LAKVAETNQT GSGSALTSEN  240
SPKTANISMP FSAVPGQNAG VIGADNAGTG VDHGSENSIG EEASLRKSQK RMRKRKMKEN  300
LSSMARFFEN LVKQVIDHQE MLHRKFLEVI DKMDKERTER EEAWRKQEAA KYNREAISRA  360
HEQALASSRE AQIVSCIEKI TGHSIDLPAR KTPLLCQQEI SKELTKELTP TDTNINNRWP  420
KAEVEALIQV RTNIETKFQE PGLKGPLWEE VSSIMSSMGY QRCAKRCKEK WENINKYFRK  480
AKESTKKRSQ QSKTCSYFNQ LNQIYSRTLT DSPSVKTCSM PPLSSNDGVE KHQGYSDLLE  540
AFISGRDITT STSPSSKKMR IDEMGTSILE MDAAANEKGE QGSHDQEKDD HEDDYEMDTD  600
EDQGSSSQDE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1289296KRMRKRKM
2291296MRKRKM
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00651PBMTransfer from LOC_Os02g01380Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap29739.m003611
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002516129.10.0trihelix transcription factor GTL1
TrEMBLB9RQW00.0B9RQW0_RICCO; Uncharacterized protein
STRINGXP_002516129.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF139981421
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.22e-51Trihelix family protein