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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29739.m003610 | ||||||||
Common Name | RCOM_0707120 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | MYB_related | ||||||||
Protein Properties | Length: 198aa MW: 22392.9 Da PI: 4.5348 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30 | 1.2e-09 | 13 | 44 | 1 | 32 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 rg+WT+ Edell ++v+ +G g W +++++ g 29739.m003610 13 RGSWTANEDELLREYVRNHGEGKWGKVPKETG 44 89***************************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.38E-8 | 8 | 44 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 10.304 | 8 | 63 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-11 | 8 | 42 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 8.3E-8 | 13 | 44 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.00E-4 | 15 | 45 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MGRSPTPKVE LNRGSWTANE DELLREYVRN HGEGKWGKVP KETGKLINLS FLNMNRDYKD 60 NHSKKIDKKG KKDINTNLPS PLVLHENNNA NTTTLVEPSL AKNVTEPSYS NDKVLEISSY 120 DNDVPSWDFM VDLKGEQFRL SEFLQTDFSK LCESNLFPVD GSSASSSEEA AFFYSEAMFK 180 DWIGEEDSIE TAALVMDP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29739.m003610 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015572928.1 | 1e-105 | transcription factor WER | ||||
TrEMBL | B9RQV9 | 1e-143 | B9RQV9_RICCO; Uncharacterized protein | ||||
STRING | XP_002516128.1 | 1e-144 | (Ricinus communis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G35515.1 | 2e-11 | high response to osmotic stress 10 |
Link Out ? help Back to Top | |
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Phytozome | 29739.m003610 |