PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29739.m003597

Common Name

RCOM_0706580

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

Nin-like

Protein Properties

Length: 309aa MW: 35159.3 Da PI: 5.8345

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29739.m003597	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	77.8	1.2e-24	217	267	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 + +++l+d +yF+lpi++AAk + +c+Tv+K+iCR+yG++RWPhRkiks+ 29739.m003597 217 TGKLTLKDFTAYFDLPIEEAAKRMSLCPTVVKKICRRYGMNRWPHRKIKSM 267 5689*********************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.041	207	287	IPR003035	RWP-RK domain
Pfam	PF02042	4.2E-21	219	266	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MADPRYIVPY HDPHNTPINL EYFDFTLDSN PTLANIDEQP QQPTSVHFHS DDIVDPSNPF 60 DGPMIWNNFS SNNNNEAGPS TQNCRNEGDA ENVSENVRSR CSGDGIGRPI TSWPPPFAPF 120 QCTYCQVLRE IIHTDGNCTS KLEIHGRLGM ICHAVLENRD QVVAALSVGI EWEENLDNDD 180 IFDPSPSSWA RQWDLTGGGN DAERVMKTAL AQQRERTGKL TLKDFTAYFD LPIEEAAKRM 240 SLCPTVVKKI CRRYGMNRWP HRKIKSMRRQ MAKIRHFVRS NNSEEKARAL AEIQRLQQEI 300 ANICTVTDN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29739.m003597

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021606976.1	1e-115	uncharacterized protein LOC110611141
TrEMBL	B9RQU6	0.0	B9RQU6_RICCO; Uncharacterized protein
STRING	XP_002516115.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7478	28	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	7e-13	Nin-like family protein

Link Out ? help Back to Top
Phytozome	29739.m003597