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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29738.m001050 | ||||||||
Common Name | LOC8269518, RCOM_0705620 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | RAV | ||||||||
Protein Properties | Length: 371aa MW: 41663 Da PI: 9.5459 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 43.9 | 5.8e-14 | 66 | 114 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ ++r++lg+f ++eAaka++ a+++++g 29738.m001050 66 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAAKAYDIAAQRFRG 114 89****9888.8*********3.....5**********99*************98 PP | |||||||
2 | B3 | 99.9 | 1.6e-31 | 204 | 301 | 1 | 93 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k+ tpsdv+k++rlv+pk++ae+h g+++++++ l +ed +g++W+++++y+++s++yvltkGW++Fvk+++Lk+gD+v F + +++ 29738.m001050 204 FEKAVTPSDVGKLNRLVIPKQHAEKHfplqsGSNSTKGVLLNFEDITGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVRFLKSTGPDKQ 299 89*****************************99999***************************************************844335555 PP .E CS B3 92 lv 93 l+ 29738.m001050 300 LY 301 55 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 7.85E-17 | 66 | 122 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.61E-25 | 66 | 124 | No hit | No description |
Pfam | PF00847 | 9.0E-9 | 66 | 114 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.5E-20 | 67 | 122 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.5E-28 | 67 | 128 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.073 | 67 | 122 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 4.1E-41 | 198 | 309 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.92E-31 | 202 | 293 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.87E-28 | 203 | 290 | No hit | No description |
Pfam | PF02362 | 1.8E-28 | 204 | 302 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.9E-22 | 204 | 308 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.662 | 204 | 308 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 371 aa Download sequence Send to blast |
MDGSCIDEST TSDSISITPT SNISPSSNPL PSKSPESPLC RVGSGTSVVL DSESGIEAES 60 RKLPSSKYKG VVPQPNGRWG AQIYEKHQRV WLGTFNEEDE AAKAYDIAAQ RFRGRDAITN 120 FKPQATDHQS EEDEIETAFL NSHSKAEIVD MLRKHTYNDE LEQSKRNYTS NNGRGDKFQN 180 RTNMNNVGLS GSERIIMKAR EQLFEKAVTP SDVGKLNRLV IPKQHAEKHF PLQSGSNSTK 240 GVLLNFEDIT GKVWRFRYSY WNSSQSYVLT KGWSRFVKEK NLKAGDIVRF LKSTGPDKQL 300 YIDWKVRTLT PTVSNPVVCS VQPVQMVRLF GVNIFKVPGN SHIEGCNGKR IREMELLSLD 360 CIKKQRVIGA L |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 1e-58 | 201 | 308 | 11 | 118 | DNA-binding protein RAV1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00024 | PBM | Transfer from AT1G25560 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29738.m001050 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002524409.1 | 0.0 | AP2/ERF and B3 domain-containing transcription factor RAV1 | ||||
Swissprot | Q9C6M5 | 1e-153 | RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1 | ||||
TrEMBL | B9SEJ0 | 0.0 | B9SEJ0_RICCO; DNA-binding protein RAV1, putative | ||||
STRING | XP_002524409.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2920 | 32 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25560.1 | 1e-150 | RAV family protein |
Link Out ? help Back to Top | |
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Phytozome | 29738.m001050 |
Entrez Gene | 8269518 |