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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29738.m001041 | ||||||||
Common Name | RCOM_0705020 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | TCP | ||||||||
Protein Properties | Length: 449aa MW: 50158.6 Da PI: 9.0231 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 149.4 | 2.4e-46 | 124 | 281 | 2 | 133 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...............ssssaseceaesssssa 82 gkkdrhski+T++g+RdRR+Rls+++a++fFdLqd+LGfdk+skti+WL++++k+aikelt++ s +ss+ 29738.m001041 124 SGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIDWLFTKSKAAIKELTDSypkvkrssdsdgssrS------------VSST 207 68**************************************************************9876654433222210............2222 PP TCP 83 snsssg..........................kaaksaa.kskksqksaasalnlakesrakarararertrekmrik 133 s+s + ++++ ++ +++k++k+ + la+esr karararert+ek + + 29738.m001041 208 SES--EvmsgtklttedngdkrgmgtegdsfvRQQRCKEsNNNKPNKPVF--NLLARESRDKARARARERTKEKLKHR 281 211..122444455556677888999999877555555524444444444..66677*****************9877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.0E-45 | 125 | 279 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 37.833 | 126 | 184 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 11.806 | 260 | 277 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 449 aa Download sequence Send to blast |
MYSSSNSFTN PLPYTNQTTV STSFFDTYQN PSSIQDYPSS SPPFLNFPVS TFLDDGDLLL 60 SDFVTQQQQQ ILGFNDISLA AETNSQENHM NLAASKKATT RTNKKIKRSS STASSQQPIS 120 RKRSGKKDRH SKIYTAQGPR DRRMRLSLQI ARKFFDLQDM LGFDKASKTI DWLFTKSKAA 180 IKELTDSYPK VKRSSDSDGS SRSVSSTSES EVMSGTKLTT EDNGDKRGMG TEGDSFVRQQ 240 RCKESNNNKP NKPVFNLLAR ESRDKARARA RERTKEKLKH RCLDKSKHCC SQSNPDILEL 300 LLPSGTLENG EKQEMKSAVK TVSDQEGEKE KAEDQEPGTI LGLTNSTVSF SFFDISQDAV 360 IPSGPDFEDH EFSGFPGNWD IISNGSNNNR YYSMPNMKLS ATGNAHVQNP NAIFMATPNS 420 QEQNLTSVFM ATSDTQNPNS GFHELFKFK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29738.m001041 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002524400.2 | 0.0 | LOW QUALITY PROTEIN: transcription factor TCP12 | ||||
TrEMBL | B9SEI1 | 0.0 | B9SEI1_RICCO; Uncharacterized protein | ||||
STRING | XP_002524400.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1738 | 32 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68800.1 | 3e-26 | TCP domain protein 12 |
Link Out ? help Back to Top | |
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Phytozome | 29738.m001041 |