PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29737.m001270
Common NameRCOM_0702490
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family TALE
Protein Properties Length: 374aa    MW: 42131.1 Da    PI: 6.3272
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29737.m001270genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.42e-072863192154
                    HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
       Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                    k +yp++e++++L +++gL+ +q+ +WF N+R +
  29737.m001270 286 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 319
                    569*****************************87 PP
2ELK22.13.6e-08240261122
            ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                    ELKh+L++ Y+++++++++E++
  29737.m001270 240 ELKHELKQDYKEKIVDIREEIL 261
                    9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012557.0E-1775119IPR005540KNOX1
PfamPF037908.4E-1778118IPR005540KNOX1
SMARTSM012563.7E-26128183IPR005541KNOX2
PfamPF037911.5E-18132182IPR005541KNOX2
PROSITE profilePS512139.865240260IPR005539ELK domain
PfamPF037891.7E-4240261IPR005539ELK domain
SMARTSM011880.0049240261IPR005539ELK domain
PROSITE profilePS5007111.677260323IPR001356Homeobox domain
SuperFamilySSF466896.84E-16262324IPR009057Homeodomain-like
SMARTSM003896.9E-11262327IPR001356Homeobox domain
CDDcd000867.32E-11263324No hitNo description
Gene3DG3DSA:1.10.10.605.1E-25267323IPR009057Homeodomain-like
PfamPF059201.1E-17280319IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MAFQDHITQQ EISFQTPLSA SASSSASAGP TWLSKAVLMR NDDVLGRNRS HKNDNNGGQE  60
EFFDGSEDNN NWERAKSKAE ILGHPLYEQL LAAHVACLRI ATPVDQLARI DTQLAQSQEV  120
VAKYSVLGNG QVIDEKELDQ FMTHYVLLLC SFKDQLQQHV RVHAMEAVMA CWELEQSLQS  180
LTGASLGEGT GATMSDDDDD QADSDANLYD GSLEGLDCMG FGPLVPTETE RSLMEHVRKE  240
LKHELKQDYK EKIVDIREEI LRKRRAGKLP GDTTSLLKAW WQSHAKWPYP TEEDKARLVQ  300
ETGLQLKQIN NWFINQRKRN WHSSPSGSTI KSKRKKTYLP IVIDKNKNAG DNSLSSSEAI  360
HHQSTQGIFA RRKT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1316335RKRNWHSSPSGSTIKSKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMap29737.m001270
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015577480.10.0homeobox protein knotted-1-like 3
SwissprotP480001e-165KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLB9SC320.0B9SC32_RICCO; Homeobox protein knotted-1, putative
STRINGXP_002523551.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-158KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]