PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29736.m002113
Common NameRCOM_0699890
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C2H2
Protein Properties Length: 224aa    MW: 25452.5 Da    PI: 7.6179
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29736.m002113genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.0002383105123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C++C k F ++  L  H++ H
  29736.m002113  83 FECQYCFKEFANSQALGGHQNAH 105
                    89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.16E-679110No hitNo description
Gene3DG3DSA:3.30.160.603.6E-579109IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.40683110IPR007087Zinc finger, C2H2
PROSITE patternPS00028085105IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010026Biological Processtrichome differentiation
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MDKEVSYILS SSLDGENCHS AESCVEKKLK LFGFELNPIR NDESCKGSVE GDESVNSSNT  60
VSSEREKPVK EKSSVGEPDD KKFECQYCFK EFANSQALGG HQNAHKKERM KKKRLQLQAR  120
KASISCYLQP FQNNLSYNCQ GSTQWFYDPS CSTPEFTLYE ESQVSKWYST VPAQAPFQQD  180
TCMFTITHPE RARENRPVIR KPASKQTCKS LDLQLGLSLQ SNMI
Cis-element ? help Back to Top
SourceLink
PlantRegMap29736.m002113
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015575264.11e-155zinc finger protein 5
TrEMBLB9S2J51e-166B9S2J5_RICCO; Uncharacterized protein
STRINGXP_002520214.11e-167(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95942635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10480.11e-15zinc finger protein 5