PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29736.m002076
Common NameLOC8287056, RCOM_0699220
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 265aa    MW: 29143.3 Da    PI: 6.5253
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29736.m002076genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.38.7e-11148195455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  29736.m002076 148 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 195
                    8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.05E-10142199No hitNo description
SuperFamilySSF474595.89E-18142213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-18144212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.828144194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-8148195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-10150200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048446Biological Processpetal morphogenesis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MDPPVLMNDG SYNLAEIWPF PVNGNGRGQF GQNLGAQFLD SNRDVSGNDL MILDRRGARG  60
GGGAKRRHDV VEDDSTKVVS SSNGNGNAVN DSDAKRLKTS GNLDENHDSK SEAEPSSGKH  120
VEQNTQPPEL PKQDYIHVRA RRGQATDSHS LAERARREKI SERMKILQDL VPGCNKVIGK  180
ALVLDEIINY IQSLQRQVEF LSMKLEAVNT RMTPGIEAFP SKDFGQQTFD AAGMAFGSQA  240
TRDYNRGTSP EWLHMQVGGG FERTS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00207DAPTransfer from AT1G59640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap29736.m002076
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002520177.10.0transcription factor BHLH089 isoform X1
SwissprotQ69WS38e-83BH094_ORYSJ; Transcription factor BHLH094
TrEMBLB9S2F80.0B9S2F8_RICCO; DNA binding protein, putative
STRINGXP_002520177.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117134105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.11e-92BIG PETAL P