PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29736.m002007
Common NameLOC8286987, RCOM_0697210
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 93aa    MW: 10551.9 Da    PI: 8.5173
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29736.m002007genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.84e-0820591554
                   HHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
            HLH 15 riNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                   +i +  ++L++l+P+ + + +s K+s + +L+++++YIksL
  29736.m002007 20 QIIDLVSKLQQLIPEiR-NRRSDKVSASKVLQETCNYIKSL 59
                   56677799*******77.89********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.109.9E-9375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.531559IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-52059IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.54E-92177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MSSRRSRSRQ SGVSRISDDQ IIDLVSKLQQ LIPEIRNRRS DKVSASKVLQ ETCNYIKSLH  60
REVDDLSDRL SELLASTDSD SAQAAIIRSL FME
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap29736.m002007
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002520108.13e-58transcription factor PRE6
SwissprotQ9LJX13e-39PRE5_ARATH; Transcription factor PRE5
TrEMBLB9S2896e-57B9S289_RICCO; Transcription regulator, putative
STRINGXP_002520108.11e-57(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56734143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.11e-40bHLH family protein