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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29728.m000800 | ||||||||
Common Name | LOC8262701, RCOM_0685420 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | TCP | ||||||||
Protein Properties | Length: 444aa MW: 47128.9 Da PI: 7.4428 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 131.3 | 9.3e-41 | 105 | 214 | 2 | 105 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg........ 88 ++ k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++ ++s +ss+ + s++ 29728.m000800 105 PTTKKPSKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNVSLRSSGTTISAPpsksapis 200 5789*****************************************************************999877777777774444455443333 PP TCP 89 ..........kaaksaakskksqksaa 105 + +++ 29728.m000800 201 fhsglafydpN-------------NSN 214 33333333220.............222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 28.705 | 111 | 165 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 2.1E-38 | 111 | 223 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 444 aa Download sequence Send to blast |
MVLMDSQSNN QQNSSSNKDH HHHHHPHHHH HGQKQEPSAA SLQLVSLENQ SSQLQQQQQQ 60 QHGSIAATTT ASATAQGPFM GSISNQIGVH PSTSNSNNSA LTIKPTTKKP SKDRHTKVDG 120 RGRRIRMPAL CAARVFQLTR ELGHKSDGET IEWLLQQAEP AIIAATGTGT IPANFSTLNV 180 SLRSSGTTIS APPSKSAPIS FHSGLAFYDP NNSNTNNNGS SENRRLLGSN TAMLGFHHQL 240 YPSNLASEEN YMRKTYTEDL LKGTSTPTTT QQEATEPIDT SSNKPAAART GAVVQEHQEL 300 GSIRPSNILA TPAAMWAVAP AAAANGGNAF WMLPVGGGTA TTAAVPEPQM WTFPAAGVTS 360 MQRVNFSGGG RLSPVQLGSM IVQQQVGGGQ QLGLGVAESN MGLLGSVNAY NSRVGLGMNL 420 EQHNQESHQQ GSDSGDDQNP TDSQ |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00228 | DAP | Transfer from AT1G72010 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29728.m000800 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002526804.1 | 0.0 | transcription factor TCP23 | ||||
Swissprot | Q9C7G4 | 7e-76 | TCP22_ARATH; Transcription factor TCP22 | ||||
TrEMBL | B9SLD5 | 0.0 | B9SLD5_RICCO; Transcription factor, putative | ||||
STRING | XP_002526804.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6077 | 30 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72010.1 | 3e-56 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | 29728.m000800 |
Entrez Gene | 8262701 |
Publications ? help Back to Top | |||
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