PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29727.m000480
Common NameRCOM_0684740
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C3H
Protein Properties Length: 504aa    MW: 57527.4 Da    PI: 9.9215
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29727.m000480genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.61.4e-10458480326
                    S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                    + +C+f+a+ G Ck+Gd+CkF H+
  29727.m000480 458 YQPCKFYAQ-GRCKFGDNCKFLHD 480
                    679******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.720.303.3E-8545IPR003034SAP domain
SuperFamilySSF689067.88E-7545No hitNo description
SMARTSM005130.00881145IPR003034SAP domain
PROSITE profilePS508009.7061145IPR003034SAP domain
PfamPF020373.0E-91144IPR003034SAP domain
PROSITE profilePS5010317.159455482IPR000571Zinc finger, CCCH-type
SMARTSM003566.2E-7457481IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-7457480IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-8458480IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-7459483IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MGYNLVAAGK LEKLKVEQCK VYLRKNGLRL TGNKDTLIQR IKEHQEILNG GGEKKYPLSS  60
FVLNCKGDAC MGDVVMFEQN VYEMYNIASR SASGPPCGTR IVAGRIVKES YGAAKQQHTF  120
TIEVLWSKGE KPLPPLHPLL IKGRNLYRLK TMRQKWEDEE ERRKVLIEKH SRGSLARNAR  180
ETRVQEKERK KILRENRALK KEKINKNHFQ LNISAAKWGI QAQQSGSCVT QAAPEPRPPS  240
LYVDSGKMAV TRNDSGSYID LAKLTIEAQK VGMSSDAIRM GGGTQKLTTL PPLTGAFAGG  300
VKMDNRSLQL VAKPQKTGPS MGSRPRELAT QHQQSYNVDP IKSTNRSSQG LDFPVETWKL  360
TFQHEQPKKQ RENDYYYGIL RNLVDHNGIQ EVQQHSKDNF CPTLSSFSTD DHCPPINKYS  420
RTTWENGCLN GYHHIQPLTS TNIYHRHHNH PTTSMDNYQP CKFYAQGRCK FGDNCKFLHD  480
LRENCGPRRE EGPYYESRLE RWQY
Cis-element ? help Back to Top
SourceLink
PlantRegMap29727.m000480
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002529187.20.0uncharacterized protein LOC8260437
TrEMBLB9ST680.0B9ST68_RICCO; Uncharacterized protein
STRINGXP_002529187.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116522224