PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29727.m000472
Common NameRCOM_0684260
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family Trihelix
Protein Properties Length: 422aa    MW: 47257.1 Da    PI: 9.8081
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29727.m000472genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix46.78.5e-15156243186
       trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspk...qCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                    +W++  + +Li+a  e+  +l+rg+lk+++W+ev++ + +++ +++s+k   qCk++++ ++k+yk +k+    +     s++p+f++l+
  29727.m000472 156 CWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVsSREDYTKSAKtdiQCKNRIDTVKKKYKLEKAKIAAG--AGPSKWPFFQRLD 243
                    7*************************************866777777654449********************98..45567******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.6E-25154245No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010431Biological Processseed maturation
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MVEVKEASFM QVRAKLLLFC NLAHFYHDKG NLGNTEHRQP AGSSPKAIPI NTMSFSVNSY  60
LQTNFNIHLN NYQAGNNAHH HAGDGNSNHS QSIPLHIQSQ SQTSPSPSNG RITVTVAAAA  120
VAEPQQQQQQ KNNLAVIPFQ IQQQPPKSNG GGREDCWSEG ATGVLIDAWG ERYLELSRGN  180
LKQKHWKEVA DIVSSREDYT KSAKTDIQCK NRIDTVKKKY KLEKAKIAAG AGPSKWPFFQ  240
RLDQLIGPVA KSTNASNIPV GIPVNSNVYR KVQLKSNNVK GGQFRKRGHQ VETEEEEDSE  300
EEEFEDSDDS LPPPEKKAKR VVVVKEKKGW GNSIRMLTQA MLKFGEVYEQ AESAKLQQVV  360
EMEKARMKFA KDLELQRMQF FIKTQMEISQ LKPCTRGANG SNQHHHSGSN NNIIMNNNSN  420
NK
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00356DAPTransfer from AT3G14180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap29727.m000472
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015580871.10.0trihelix transcription factor ASIL2 isoform X2
SwissprotQ9LJG85e-84ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLB9ST600.0B9ST60_RICCO; Transcription factor, putative
STRINGXP_002529179.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79193044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.12e-48sequence-specific DNA binding transcription factors