PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29713.m000181
Common NameLOC8261638, RCOM_0662420
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family EIL
Protein Properties Length: 476aa    MW: 54630.4 Da    PI: 4.9754
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29713.m000181genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN33766.1e-115253341353
                    XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
           EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLraWWk 96 
                    eelkkrmwkd+m++++lke+  +    +e++     s   +e++rrkkmsraQD+iLkYM+k+mevc+aqGfvYgii+ekgkpv+g+sdsLr+WWk
  29713.m000181  25 EELKKRMWKDRMRMQKLKEKCAS----EEPE-----SVAKEEASRRKKMSRAQDSILKYMVKIMEVCKAQGFVYGIISEKGKPVTGSSDSLRQWWK 111
                    8**************99887775....5663.....33458******************************************************* PP

                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHHHHT--TT--. CS
           EIN3  97 ekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwgelglskdqgt 192
                    ek +fd+++p a+ +      ++s +++   ++ s+ h l++lqD+tlgSLLsalmq c ppqrrfple+g++pPWWPtG+e wwge+g s+++g 
  29713.m000181 112 EKARFDQEAPQALEEF-----LPSLAQDE-FDSVSSMHLLQDLQDSTLGSLLSALMQRCVPPQRRFPLERGLAPPWWPTGNEIWWGEQGPSREHGI 201
                    *******999998766.....44433333.567899************************************************************ PP

                    -----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
           EIN3 193 ppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsahssslrkqspkvtlsceqkedvegkk 288
                    ppykkphdlkkawk+svL+avikh+sp+++++r+l+ qsk+lq km+akes+++++v+nqee+++               ++t +c + +d e+++
  29713.m000181 202 PPYKKPHDLKKAWKLSVLAAVIKHLSPNFDRMRRLVTQSKCLQAKMTAKESATWSKVVNQEEALL---------------QLTEKCLKIDDPEKEQ 282
                    **************************************************************977...............3444444444444444 PP

                    XXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX......XXXXXXX.XXXXXXXXXXXXXXXX CS
           EIN3 289 eskikhvqavkttagfpvvrkrkkkpsesakvsskevsrtcqssqfrgsetelifadknsisqne 353
                     s           ++ ++ +krk  ++++a++      + cq+ q+++se+ l+f +kns+ +++
  29713.m000181 283 GSG----------SDSQISEKRKCAFDREASMDR---LYACQNLQCPESEVGLGFLEKNSRADHQ 334
                    444..........245678899988888888864...59***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048733.6E-11025263No hitNo description
Gene3DG3DSA:1.10.3180.101.8E-66138267IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167684.84E-58142266IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MVKFLGEVDS PISIEEEEEE EISYEELKKR MWKDRMRMQK LKEKCASEEP ESVAKEEASR  60
RKKMSRAQDS ILKYMVKIME VCKAQGFVYG IISEKGKPVT GSSDSLRQWW KEKARFDQEA  120
PQALEEFLPS LAQDEFDSVS SMHLLQDLQD STLGSLLSAL MQRCVPPQRR FPLERGLAPP  180
WWPTGNEIWW GEQGPSREHG IPPYKKPHDL KKAWKLSVLA AVIKHLSPNF DRMRRLVTQS  240
KCLQAKMTAK ESATWSKVVN QEEALLQLTE KCLKIDDPEK EQGSGSDSQI SEKRKCAFDR  300
EASMDRLYAC QNLQCPESEV GLGFLEKNSR ADHQFQCAYR AESDVDQENT TDSRNHVESS  360
ADALRWYDEV LISPPIDVSS LTDWPNTVLA KGNFEGKEIA TTENEYISRY KMEDYPIYWG  420
TEIEALIQQG AFGYRRGNMD YSSQENLHDQ GTQTSIWDLG NEWSGTGQPQ TKKCSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A7e-561402651126Protein ETHYLENE INSENSITIVE 3
4zds_B7e-561402651126Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap29713.m000181
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002533137.10.0putative ETHYLENE INSENSITIVE 3-like 4 protein
SwissprotQ9LX161e-134EIL4_ARATH; Putative ETHYLENE INSENSITIVE 3-like 4 protein
TrEMBLB9T4G80.0B9T4G8_RICCO; Transcription factor, putative
STRINGXP_002533137.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32234200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10120.11e-129EIL family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Jeong HJ,Choi JY,Shin HY,Bae JM,Shin JS
    Seed-specific expression of seven Arabidopsis promoters.
    Gene, 2014. 553(1): p. 17-23
    [PMID:25261846]