PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29713.m000180
Common NameRCOM_0662410
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family EIL
Protein Properties Length: 398aa    MW: 44918.9 Da    PI: 4.8548
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29713.m000180genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN32731.2e-83119364263
                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-T CS
           EIN3  64 mevcnaqGfvYgiipekgkpvegasdsLraWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppq 159
                    me+c+aqGfvYgi+p+kgkp +g+sdsLr+WWke+ +fd+++p+ai k     l+l +++     + s  + l +l +Ttl SLL almq c ppq
  29713.m000180   1 MEACKAQGFVYGIVPDKGKPITGSSDSLRQWWKEEAQFDQKAPVAIGKF----LVLPQDELF---PVSCMQLLDDLHNTTLRSLLAALMQRCIPPQ 89 
                    9**********************************************98....899877766...7899999************************ PP

                    TS--TTT--HHHH---S--HHHHHHT--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT CS
           EIN3 160 rrfplekgvepPWWPtGkelwwgelglskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeek 255
                    rr+plekg++pPWWPtG+e wwge+gls+++g+ppykkph+lkkawkvsvL+avikh++p+++ ir+l+ +sk+lq km+akes ++++v+n+ee+
  29713.m000180  90 RRYPLEKGLAPPWWPTGNETWWGEQGLSRQHGAPPYKKPHNLKKAWKVSVLAAVIKHIAPSFDIIRRLVTRSKCLQAKMTAKESTTWSKVINREEA 185
                    ************************************************************************************************ PP

                    -S--XXXX CS
           EIN3 256 ecatvsah 263
                    +++   + 
  29713.m000180 186 LFRLSETC 193
                    99754444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048731.1E-851184No hitNo description
Gene3DG3DSA:1.10.3180.104.1E-6361188IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167683.53E-5564187IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MEACKAQGFV YGIVPDKGKP ITGSSDSLRQ WWKEEAQFDQ KAPVAIGKFL VLPQDELFPV  60
SCMQLLDDLH NTTLRSLLAA LMQRCIPPQR RYPLEKGLAP PWWPTGNETW WGEQGLSRQH  120
GAPPYKKPHN LKKAWKVSVL AAVIKHIAPS FDIIRRLVTR SKCLQAKMTA KESTTWSKVI  180
NREEALFRLS ETCPRTEARR GCSSSGLQVT EGRKRVFERE ASENRLNAFQ NLQCPQSDAG  240
SGFVENNSRT DHQYQYAYRA EETDNNRQVN NADWRTDSST EYHPWYGETS ISPQMISAAM  300
DNLFNALSVT SWANSVLADA NPSYDTESST MEIGDGTGYN MEEYSSYLET GIEDLACDGA  360
SGYEREDTDL NQNSSQDNLE KEGSLTSIWD LGNEWDLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A1e-51661886128Protein ETHYLENE INSENSITIVE 3
4zds_B1e-51661886128Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap29713.m000180
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025015562.10.0LOW QUALITY PROTEIN: putative ETHYLENE INSENSITIVE 3-like 4 protein
SwissprotQ9LX162e-94EIL4_ARATH; Putative ETHYLENE INSENSITIVE 3-like 4 protein
TrEMBLB9T4G70.0B9T4G7_RICCO; Transcription factor, putative
STRINGXP_002533136.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32234200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10120.11e-96EIL family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Jeong HJ,Choi JY,Shin HY,Bae JM,Shin JS
    Seed-specific expression of seven Arabidopsis promoters.
    Gene, 2014. 553(1): p. 17-23
    [PMID:25261846]