PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29709.m001180
Common NameRCOM_0658460
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family Trihelix
Protein Properties Length: 490aa    MW: 54630.2 Da    PI: 10.1587
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29709.m001180genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix699.1e-22178269187
       trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqlea 87 
                    +W+++e+ aLi+a+r+++ +lrrg+lk+++W+ev++ +          ++++qC++k+e+l+kry+ + +++++   s+ ss++++f++++a
  29709.m001180 178 CWSHDETVALIDAYRDKWYTLRRGNLKANHWQEVADSVarrcPTASPPKTAVQCRHKMEKLRKRYRTEIQRARSMpVSRFSSSWVHFKRMDA 269
                    7**********************************9995443444558999***********************9789************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.0E-22177270No hitNo description
PROSITE profilePS500906.133179239IPR017877Myb-like domain
SMARTSM005952.1E-14186275IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MVNTTQSIKA KNNYVCQGEE NGNTEHTTYQ PVARHHHHPF PWRTLANPHT LTHLSGGLSI  60
VDLKISRTPL PHPTHPSPFY PTKINSICHQ TPPLPLPPRP LFLFLSPPQP PFLFALSAAS  120
FFISIYFSLP ITTPSLIMST PGPGSPSPPD SSLTPNPLPL VPALPQPSTN PRRLPPPCWS  180
HDETVALIDA YRDKWYTLRR GNLKANHWQE VADSVARRCP TASPPKTAVQ CRHKMEKLRK  240
RYRTEIQRAR SMPVSRFSSS WVHFKRMDAM EKGPQAKTDY NSESDNEDEK EDDDDDANQG  300
FYMENQRNGG SVLNTRSIHK LYRNGIGVNT GSNMNSGASA SASAASGFRI RIPTGVSIAQ  360
PAPKFYDQKY GVNPNSIPKP NFGGAGSGSV SGSGLASGRV LRGSDEIGKK RERDPMEEMV  420
AAIKVLGDGF VRMEQMKMEM AREIETMRMD MEMKRTEMIL HSQQRIVEAF AKAFSEKKKK  480
KPKRIPSPES
Cis-element ? help Back to Top
SourceLink
PlantRegMap29709.m001180
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015579264.10.0trihelix transcription factor ASIL1
TrEMBLB9SKE70.0B9SKE7_RICCO; Transcription factor, putative
STRINGXP_002526477.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46382838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.12e-88Trihelix family protein