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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29706.m001295 | ||||||||
Common Name | RCOM_0653390 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | MYB_related | ||||||||
Protein Properties | Length: 623aa MW: 67870.5 Da PI: 8.9354 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.4 | 8e-09 | 508 | 556 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E +lv++v ++G g+W+ I r Rt ++k++w+++l 29706.m001295 508 AWTLSEVMKLVEGVSRYGAGRWSEIKRLAFasySYRTSVDLKDKWRNLL 556 7****************************99**99************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.225 | 501 | 560 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-12 | 503 | 559 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.56E-16 | 503 | 570 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.9E-9 | 505 | 558 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 1.83E-19 | 507 | 557 | No hit | No description |
Pfam | PF00249 | 7.4E-7 | 508 | 556 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 623 aa Download sequence Send to blast |
METEVAVEGN EEGKFKEAGV AKSYSSLSST KQLSDPIVYK LVRVEGDGRL VPATDDEVME 60 VESLLLDEKS KMHIVADTGQ AVGCISNDQS SSGMLLQLDA SEACGSPEYS SAYVIVDNQC 120 SDQHDKLPGI DEKLQSKIPL QENVPSSASS LSKSHVHRSG SFGDCSNPSA KLTEAGSLIS 180 ATATTSIPDF SKLKGEICLD NLSIKELHET FKATFGRDTT VKDKQWLKRR ITMGLTNSCD 240 VSATTFIIKD NKLVKKGKEG FDNVNSAFAN DPALGTMDAN EEGSPINYGS QLEDHQVVSL 300 KRSLSIGENS GSEDHNIEQR AAKRVRKPTR RYIEELSEVE SKESSGRIRT SLKNPGLGQM 360 SSNSHGRLVR NVSSDGRTMI TRLDSLGGSG IHIPCVSRVR RSRPRKNFMA LLKFNPSSMG 420 MTAKLVKKAL GARSFLTDDE NGEKVIKASS APSQVLHQGK DRPVPTMEAV ELEHSKVLKP 480 VDSSGDSDDN VVTVPTSKGG IRRKHHRAWT LSEVMKLVEG VSRYGAGRWS EIKRLAFASY 540 SYRTSVDLKD KWRNLLKASF AQIPSDRGIN SRKTAGTMPI PEPILLRVRE LAEMQSQVPP 600 NISSSKVAGN TGSSVHEKQS GFL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 399 | 405 | RRSRPRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29706.m001295 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT029244 | 9e-39 | CT029244.1 Poplar cDNA sequences. | |||
GenBank | CT029245 | 9e-39 | CT029245.1 Poplar cDNA sequences. | |||
GenBank | CT029544 | 9e-39 | CT029544.1 Poplar cDNA sequences. | |||
GenBank | CT029545 | 9e-39 | CT029545.1 Poplar cDNA sequences. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015576126.1 | 0.0 | uncharacterized protein LOC8284664 isoform X1 | ||||
TrEMBL | B9S5S1 | 0.0 | B9S5S1_RICCO; Uncharacterized protein | ||||
STRING | XP_002521340.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7849 | 30 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.1 | 1e-104 | TRF-like 6 |
Link Out ? help Back to Top | |
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Phytozome | 29706.m001295 |