PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 29705.m000597 | ||||||||
Common Name | RCOM_0651000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
|
||||||||
Family | HB-other | ||||||||
Protein Properties | Length: 162aa MW: 18693 Da PI: 7.4178 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 24.7 | 3.9e-08 | 18 | 39 | 35 | 56 |
HHCTS-HHHHHHHHHHHHHHHH CS Homeobox 35 kklgLterqVkvWFqNrRakek 56 +k +Lt++qV +W+qN+Ra++k 29705.m000597 18 NKKRLTQDQVAIWYQNKRARWK 39 56689****************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00046 | 1.8E-5 | 19 | 39 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.36E-6 | 20 | 50 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.1E-7 | 21 | 48 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 9.037 | 22 | 41 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.23E-4 | 22 | 42 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 162 aa Download sequence Send to blast |
MDFFHTQTQQ IHTPKHSNKK RLTQDQVAIW YQNKRARWKT QSLELEYNTL QVKLENALID 60 KKRLEKEVMQ LREELRKAQE MVFAFNQRVI IPHHQQQQHH HHHPLPLPPH SLNINNVSCN 120 SSCDEGGSTS LHEDVNGEVL QLDELYACLL GSSGGAAGST WG |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 29705.m000597 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015577335.1 | 1e-113 | LOW QUALITY PROTEIN: homeobox-leucine zipper protein ATHB-52-like | ||||
TrEMBL | B9SBB4 | 1e-118 | B9SBB4_RICCO; Uncharacterized protein | ||||
STRING | XP_002523283.1 | 1e-119 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11011 | 22 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G53980.1 | 2e-20 | homeobox protein 52 |
Link Out ? help Back to Top | |
---|---|
Phytozome | 29705.m000597 |