PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29688.m000255
Common NameRCOM_0624640
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family Dof
Protein Properties Length: 284aa    MW: 31499.9 Da    PI: 7.9187
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29688.m000255genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof127.93e-401777262
         zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                   +e+alkcprCdstntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rknk+s+
  29688.m000255 17 PEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRST 77
                   7899******************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-30575IPR003851Zinc finger, Dof-type
PfamPF027013.2E-341975IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.6462175IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102359IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MLVCSKPHQE RKPRPQPEQA LKCPRCDSTN TKFCYYNNYS LSQPRYFCKS CRRYWTKGGT  60
LRNVPVGGGC RKNKRSTKKA QDHHQLNPHT NPLTGLPPLS YDSNDLTLAF ARLQKQSSGQ  120
LGFDDNDFSI LGNPSNAHCD IMLGNPNSIN TSASTPSFLD ALRSGFLDTQ NNNFQNLYYG  180
YGNGSIDDVE NSGGVCVSGE MMLPYDHQDV STSAATQAVT VTTMKQEFCN GREDHNSNNS  240
KVLFGFPWQI NGNGISDLDS GRESWNNHGL GNSTWHGLIN SPLM
Cis-element ? help Back to Top
SourceLink
PlantRegMap29688.m000255
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002532252.20.0dof zinc finger protein DOF2.1
TrEMBLB9T1Y30.0B9T1Y3_RICCO; Zinc finger protein, putative
STRINGXP_002532252.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50263051
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28510.11e-51Dof family protein